BtaINT0009341 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E6R1]
Coordinates
chr9:102132404-102133397:-
Coord C1 exon
chr9:102133377-102133397
Coord A exon
chr9:102132548-102133376
Coord C2 exon
chr9:102132404-102132547
Length
829 bp
Sequences
Splice sites
5' ss Seq
ATGTTGAGA
5' ss Score
-1.28
3' ss Seq
CATTGGTTAATTTTATTCTGTTC
3' ss Score
-4.25
Exon sequences
Seq C1 exon
ATGAATATCAATGAAAAAATG
Seq A exon
TTGAGATTATTTTGGACTGAAGTCAGTTGTATTATTGGATTTAGTGGCGCTGAGAAAAAGGAGAATTTGTGCTGTAAACAGTAAAAGAGAAGAACTTATTCACTAACCATATTTTTAGCACCCGAAGTCTGTTAGTCCTTTACGCTCCTGTTTGATACTCTTACTAGAGCGTCACTCCTGTTAAGTGTTAAATGTGTGATAATCACGTAAAGTAGAAGTACTTTGTAGGCTTAACCGCCGGCACTGGAATACAGCGCTGATTCAACTGCGACACTGAAGTTCATCGTTGGAAAACGGCCGTGTAACACGATGACATATCTATAGGTTAAAATTTCTGAAGTTTTTTCTTTTTTCTCTACTTTTTCAAAGTGGTGAAACGTAAATAACACAGAATTTGCTGTTTTAAGCATATCAAGTCTATAATCCAGTGGCATTAATGATACTCACAATGTGGGCCACCATCACCCCTATCTACTTCCCAAACCAGAAACTCTGTATCCGCAAAGCAGAGAATTCCTCCTTCGCCTTTTCCTCAGCTCCTGGAAGCCACTAATCTGCTTTGTCTCTATGAATTTACCCGGTCCAGAGGTTTCCCATAGGTGGAATCATATAATACTCGCCCTTTGTGTCTAGCTGATTTTATTTACCATACTATTCTTAAGGCTTCTCCAAGTTGTAACTGAACTTCATCCCTCCTTATGGTTGAATCATAGTCCACTGTGTGTGTGTATATCGTTAAAAATATTTGTGCTACATCTATTTGCACAACATGTCGTTTTTCCATATCTTTGATGTAGACGAAGATGTCACATTGGTTAATTTTATTCTG
Seq C2 exon
TTCGATTCTTTTACAGATTTGACAGATGAAAAAGTGAAGGCCTATCTTTCTCTCCACCCTCAGGTTTTAGATGAATTTGTGTCTGAAAGCGTTAGTGCAGAGACTGTAGAAAAATGGCTGAAGCGGAAAAACAAGAAGTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046733:ENSBTAT00000064534:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]