BtaINT0010562 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101506891-101509912:-
Coord C1 exon
chr5:101509838-101509912
Coord A exon
chr5:101507054-101509837
Coord C2 exon
chr5:101506891-101507053
Length
2784 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TCTTTATCTTTACCTTCCAGGAC
3' ss Score
11.35
Exon sequences
Seq C1 exon
GGTGGAGTTGATGATGAGGTCTCCTTGACTGCCTACATTACAGCTGCATTGTTGGAAATGGGCAAGACCATAGAT
Seq A exon
GTGAGTTTCTCTAGCGCCTCCCCTTGACACTCTCTGGATCATGCCTATTTCTAGAGAAAGTTAGCTAGTTTTGTCCCTCTCCAGCCAATAAAGGACAGAAATGATAGGGACCTAACAGAAGCAGAAGATATTAAGAAGAGGTGGCAAGAATACACAGAAGAACTATACAAAAAAGATCTTCATGACCCAGATAATCACGATGGTGTGATCACTCACCTAGAACTAGACATCCTGGAATGTGAAGTCAAGTGCACCTTAGGAAGCATCACTATGAACAAAGCTAGTGGAGGTGATGGAATTCCAGTTGAACTATTCCAAATCCTGAAAGATGATGCTGTGAAAGTGCTGCATTCAATATGCCAGCAAATTTGGAAAATTCAGCAGTGGCCAAGGGACTGGAAAAGCTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACCGCACAATTGCACTCATCTCACACACTAGTAAAGTGATGCTAAAATAAAAATATATTACATTTTATACTTGAAAATAACATAAAAGACAAGTTGTAAGGGATTATACAAACAATAATAGCAGGTATCTTGAAGTGATGTGGTATAGTGGGTGTTTCCTCCAGTCTCTACTTTCTAAAATTTCTAAACTATTATTTGGAAATTGTATTACTGTTTTACTTTAACAACTAAATGACAGCCACTCTTTACCAGATACTTATTATGTGCCAGGTACTTCATTGCTTTTTCTCATTAGAACCTCACACTAATCTGTGAGATAAATCCTATTTATTCACAATTTACAGATGAGGAAAGGAGGATTGAAAGAGGTTAAGAAACTTGCCCAAGGGCACAGAGCTCCTAAGCAGAAGAATCAGGATGAGACCCAGACAAGTGATTTAAGACCAGAACAGTTGTGCTATTTGCTACATGACAAATGCTTGGATGCCCCTTGTTTAAATGTCAAAAAGGAGAGACACTTCTAGCTTCCTGGAGAGTCTAGATAAACCTATACATCTGGGGAGACACCGAGGACCCTCAGCTCGCCTACCACACTTCACAGGTCTTGAACTGAGAACAAAACGTCTTTTCTCCAGATCTCTACATTTACATGATGTGAACAAATGAGACAGTTTTGCAAAGCAAACCCCATTTGCCCGTACGGGGTTGAAAGGTCCACTCCTCCACTTTTCCCTGAACTTTCACATCTGAACCGATGTGAAACAAGGGTACTTTTTAAAGAGGAAGCAGGAAACTCAGTGGTTCAACTTTGGCAAGCACAAGAATTTGTCAGCAAAGCTTGGGTTATGCTTAGGGACCTCCAACTTTGGAAACACAGACTTTCCTTTCTGATAGGCCTGTAATGTTCCTATGCATCTTCCTTATTAAATTATGTCTTTTCACTGAAAAATAAAATAAAATAAAATAAAATTCTCCAAGCCAGGCTTCAGCAATACATGAACCGTGAACTTCCAGATGTTCAAGCTGGTTTTAGAAAAAGCAGAGGAACCAGAGATCAAATTGCCAACATCCACTGGACCATTGAAAAAGCAAAAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTATGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGCAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAACCTGTATACAAGTCGGGAAGCAACAGTTAGAACTTTTGCTTGGAACATGCAACAACAGACTGGTTCCAAATTAGGAAAGGAGTAGGTCAAGGCTGTATATTGTCACCCTGTTTATTTAACTTATATGCAGAGTACATCATGAGAAATGCTGGGCTGGAGGAAGCATAAGCTGGAATCAAGATTGCCGGGAGAAATATCAATAACCTCAGATATGCAAATGACACCACCCTTAGGGCAGAAAGTGAAGAAGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGCATGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACGAAGATCATGGCATCCGGTCCCATCACTTCATGGCATATAGATGGGGAAACAGTGGAAACAGTGGCTAACTTTATTTTTCTGGGCTCCAAAATTACTGCAGATGGTGATTGCAGTCATGAAATTAAAAGACACTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGACAGCATATTAAAAAGCTGTCATGAAAAGAGACATTACTTTGTCAACAAAGGTCAGTCTAGTCAAGGCTATGGTTTTTCCAGTGGTCATGTATGGATGTGAGAGTTGGACTATAAAGAATACTGAGTGCTGAATAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTTGACTGCAAGGAGATCCAACTAGTCCATCCTAAAGGAGATCAGTCCTGTGTGTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTGAAGCGAAGAGCTGACTCATTTGAAAAGACCCTGATGCTGGGGAAGATTGAGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGTTGGATGGCATCACTGACTCAATGGACATGGGTTTGGGTGGACTCTGGGGGTTGGTGATGGACAGGGAGGCCTGGCTTGCTGTGGTGTATGGGGTTGCAAAGAGTCAGACACGACTGAGTGACTGAACTCAGAACCGAGAGCCTTTTAAACTGAAAGGAGGGTATGGTGACTTCCTTATCACCTCCACTTTTTAAAGGAATGCCTTCTAAATTCAGTTCTTTATCTTTACCTTCCAG
Seq C2 exon
GACCCAATGGTGAGTCAGGGGCTGCAGTGTGTCAAGAGTTCTGTTTCCTCTACCACCAACCTGTACACACAGGCCCTCCTTGCTTATACGTTCTCTCTGGCTGGAAACATGAACATCAGAAACATTCTTCTTGAAAAGCTAGATCAACAGGCTATTGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097:ENSBTAT00000037825:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(14.4=100)
A:
NA
C2:
PF076789=A2M_comp=FE(32.3=100),PF076789=A2M_comp=PU(10.3=5.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]