DreINT0000095 @ danRer10
Intron Retention
Gene
ENSDARG00000074764 | A2ML1 (5 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:3696539-3696911:+
Coord C1 exon
chr3:3696539-3696613
Coord A exon
chr3:3696614-3696748
Coord C2 exon
chr3:3696749-3696911
Length
135 bp
Sequences
Splice sites
5' ss Seq
ACGGTATAA
5' ss Score
4.59
3' ss Seq
AGTTGCCTCTTTCCTTCCAGGAT
3' ss Score
10.87
Exon sequences
Seq C1 exon
GGTGGCGTGGACGATAACGTGACAATGACTGGCTACATCGTTGCATCGCTGCTTGAAATTGGAGTCCCTGTTACG
Seq A exon
GTATAAACAATGGTTCTTTTAGTTAAATTAACTTGTGCCATGTTGAAGAAAAAAAAGTTTCTATTTAACTACAAATATTATTTTTATTTGTTTATTTTGGTAGTACTGCGCATGAAGTTGCCTCTTTCCTTCCAG
Seq C2 exon
GATCCTGTCATTACGAAGGCTCTGTCGTTTTTGAGGCCTCTTGTTGGGAATCTGGGAAACACCTATGTCACTGCTCTGCTGGCCTACACCTTCAGTCTGGCTGGAGAGACCAGAACTCGAGCACAGCTTTTAAATTCCTTGAGAAACACTGCCATTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074764:ENSDART00000113616:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(23.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCGTGGACGATAACG
R:
AGAAATGGCAGTGTTTCTCAAGGA
Band lengths:
234-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]