GgaINT0117852 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:75620884-75621330:+
Coord C1 exon
chr1:75620884-75620958
Coord A exon
chr1:75620959-75621176
Coord C2 exon
chr1:75621177-75621330
Length
218 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
ACTTTCAATTCCTTTCTCAGGAT
3' ss Score
9.77
Exon sequences
Seq C1 exon
GGTGGTGTGGATGATACAATCTCATTAACAGCCTATGTCGCTGCTGCCCTTCTTGAGCTCCAATTGGAGAAAAAT
Seq A exon
GTAAGTCATGTCTGAACTCTTTTAGGGCCTTTTAACATGGATAATGTGTTCTTACTGTCATTGACCTGATTTGCAGCAAGCAGATCATCTGTCATTCCTGACTAATCTTGGGGGAACACTTGTCACTGAAAATGATGCAGGGCTTGCAGGGAAGATGTAGCTGTAATACTTGAGGATTGTTGATATATTGTGAAATTTACTTTCAATTCCTTTCTCAG
Seq C2 exon
GATACAATGCTGGATAACGCCTTACGTTGTCTTAAGAATGTTACATTTGATGAGACCAGCCTTTATGTCAAGGCCTTGATGGCTTACGTATTCACACTGACGGAGGATGTGGAGATGAGACAGGAGCTCCTGGATAAGTTAGAGAAAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252:ENSGALT00000023051:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.0=100)
A:
NA
C2:
PF076789=A2M_comp=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGTGGATGATACAATCTCA
R:
AGTTTCTTTCTCTAACTTATCCAGGA
Band lengths:
228-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]