BtaINT0010848 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61979569-61982376:+
Coord C1 exon
chr19:61979569-61979767
Coord A exon
chr19:61979768-61982209
Coord C2 exon
chr19:61982210-61982376
Length
2442 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
TTTCATTTTCTCTGACTTAGGTT
3' ss Score
10.44
Exon sequences
Seq C1 exon
ATCCCGGTGTCGGGGGCCTGGCGGAAATCGACGTGACCCGAGACCCTGGAGCGGAGTCTGAAGCCCAGCAGGCTCTTGGTTCCCTTCCGGAAGTGAAACAGGCCGCCAGCTCTGCAGCTCTGTGGAGACGCCAAGTCTGTGCGGTGGCGAGACTCCGCTTCTTAAAGCTGAGGAATGAGAGGAAGATTTTCCTGTCCTT
Seq A exon
GTGAGTATCGCACTTTTTAAGAAATTTTTTTGTTTTGTTATTTTTAAAATATTTACTCACTTACTTATTCTCGTCTGCGTGCGGTCCTGGCTGCAGGGCGCGGTCTCTCCCTGGGGCGTGCTGGCGTCTCTCCAGCTGCAGTGCTCAGGCTTAGTTGCTCCAAGGCACGTGGGATCTTAGTTCCCCGACCCGGGATTGAACCCGTGTCCTCTGCATTGGAAGGTTGGTTCTTAATCACAGGACCACCAGAGAAGCCCTTATCAGACTCTTCAAGTCCTTAGTCCATATATGCATGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCAACTCTGTGCGACCCCAGAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAGTGAAAGTGAAGTCGCTCAGTCGTGCCCGACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGGTCCTTTATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCGTTGCCTTCTACCCATATATGCATAAAAGGTCCCAATGTCAAGAAAATACGTCTACTGATTTCTTCATTCATGTAATAGGTTTGTTTTGAGTGTCTGCAGTAATTAAACGCCACTGAAAAGGCCTTGAGACGGACGATCTTGTCAGGGAGAAAAGCACCAATCAAGTAACTACCCAATAACCATGCTGTTTGTTCAGTACACCACAAATCTTTACTGAAGCCTGTAAACTGTTCTACATACCTTGATTGAGATCTGTACCCTTCTGTTAGTGTTTACCTTCTGATTGGGGGAAAAGGTAAAAAATGATAAATATAAAAACTAAATACATTATATAGTAGCTTATACAAAGTAGAGTAGACCAAGAAGCTGGGGAGGGAGCTAGGGTTCATTCTCGACAGGTGGGTCAGTGTTGGTCTCATTGAAATGCTCACCTTTGAGCCAAGACTAGAGAACGGGAAAGGATTAGCAGACAAGTGGTGGAGGATGACGGCTCAGAACTGAAAGCATCTGTTTATCTGGCAAAAGGGAAGTCCTTCAGGTTTTACGAAGAGAAAGCCTGAAAGTAGATAACGCTTGTGAGGTGCTTGACCACAGAGGGAATTTCTACTGTTCTTTCTATGATCAGTAGCTGAAGGGAGACTGCAGTCAGAAGGAAATTTCATTATTTCTTTATGAAGACAGAGAGAACATGCTTTAGTGATGATGGGAATGAGCCAGTAGCAGGGACGTCACGGAGGATGAAGGAAAGATGAACTCAGTGTGGGAGGTCCCAGGAGTGGGGTGGAGCAGGTCCAGAGGAGCACTGAGGCCCGGCCTGTGATGCGAGCAGAGGCATCGCCTGTGATACCAGAGGGGTGGAATGGGACCTCGGGCGCGTCCTTGGATCTGTCTTCTTTGTCGTTGATAAGACCGGAGGGGAATCCTCTTTGGTGGACTTCGTTGTTCTTTCTCTAGAAGCCGTGAGGCTGACAGAGTCTGAGGTCTGATAGGGAGGAGATTACTGAAAAGAGTGGACGCACATACTTGCTAGTGAAACAGAAAGACGGCTTGGAAGTGTTTTACTTACGGTTGTTGAAGTGAGTTCTAGGATCTGAAGCTGGCGTATTCAGTGCTGCATGTAGGTTCATCAAAGTTAAGATACATGTCAGGTAACAGCGGACAGAAGGTCAAGCGTCACTTGAAATCGTGCTCGTGGTGCACTTGGAGCCACAGCGTGAAGCACGGCTCCTTGCCGTCCAGAACTCTCGAGACAGGCCTCTGAGTCCATCACACTTTTCTATATCGGATAAATCTTTATTATGTTGAATTGGTCCATAGTGGTTTTCAGGTCTACTGTTAATATAGCCTACTTTGCTGTCTATTCTGTTCATTTTTGAGACTTTTAATGCTGAAACCCCAGCTAAAAATCTTAATTTATCTAGTTAAAAAGTAACTGTAATGTATAGTGGAGCTATATGTCACGTTGTATTTTCCAAATCTCCTGTAAATGTGTTGTCATACTTTTATAATATAAAAAATAAAAATGAAAGAAGAATGAAGCAACAAGAGTAAAGAGATATTTTAAAAGCACCCCCTAGGTAGGCTGTCTGAGGTCCCGCAGACTCTTCCACGCGTCCTGGTCAGCCAGCACGCCCGCGGAGGAACCCTCCGGACCTCACCTCCTCCTCTGGTCCTCCGTCCCCCTCGGACGCCTGGCAACGTGATACAATCACGCTAAAATGTGGGCCCACTTTCAGATTAATCCCACTCTGGGTTTCATTTTGTGTAACTACATGGCATGTCTGCGTGTTGGATTTCCATAGGTTGGCCTTTAAAGAGCGTGTCTGTGACTTAATCAGAGGGAACGTGTTTTAGACTCACGGTTTCATTTTCTCTGACTTAG
Seq C2 exon
GTTAGTGGTGTTCGGAATTGCCTTAATCCCCACTGTCTGCGAGAAGATCGTGTATTCAGTGTATTTTCATGATCATCGCTGGGAGTTTTCACCCGGAATGTACTTCCGTTCTCTGGAACAGCTCCCTCAACCTCCTCTGACCAACCTGTTGATCATCAACAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(7.9=43.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development