BtaINT0010860 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:62000430-62001008:+
Coord C1 exon
chr19:62000430-62000547
Coord A exon
chr19:62000548-62000916
Coord C2 exon
chr19:62000917-62001008
Length
369 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
GATGGTGAGCCTTTTTCCAGGTG
3' ss Score
4.09
Exon sequences
Seq C1 exon
AAGCCAGTAATAATGGCAAGCTGTTTACACAAGGAATATAAACAGGAAAAGAAAAGGTGCTTTTCAGCAAGAAAGACGAAAACAGCCGTTCGGAATGTTTCCTTCTGTATTAACAAAG
Seq A exon
GTTTGGATAATGTATTGTTTATTAGGATGTTCCTTATTCTCTAGTTTTAGCACTAGGAAGGGAATGCTTTTCATTCTTTCAGTCTGTTCATATATCTCAGTTAACATGTAATTATAAAAATACTTGACTTGCTGGCAGAGAGACGTTTTTATTTCAAAATCCTGTCCCAGATCAAATGTCAAGAAAACCAACTTATCTTAGATCCAGATGTCCAAACTCTTCTCATGTAAATCCGCAGTCTTTTCATTCACATAGAAATGACAGAGGTGCTGTCTGAAAATGCTATTTTATTTCAAACATTCCTGAGCTAAGTGATTTTGGGTTAGCCGATTTTTTAAGAACAGAAAGTGATGGTGAGCCTTTTTCCAG
Seq C2 exon
GTGAAGTACTGGGACTGCTGGGGCACAATGGAGCTGGGAAGAGCACTTGTATTAAGATGATAACTGGAGACACAAAGCCGACCGCGGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.177
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(23.8=25.0)
A:
NA
C2:
PF0000522=ABC_tran=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGTAATAATGGCAAGCTGT
R:
GTCGGCTTTGTGTCTCCAGTT
Band lengths:
199-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development