BtaINT0010941 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003531 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr4:7426069-7430596:-
Coord C1 exon
chr4:7428821-7430596
Coord A exon
chr4:7426179-7428820
Coord C2 exon
chr4:7426069-7426178
Length
2642 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TCCTGTCTGTTTCCCCCAAGTGT
3' ss Score
7.22
Exon sequences
Seq C1 exon
TTTTGTTCCAAAGGATAAAATTCTAGAAAATCTGAAACTCAATCATTTTCTCACCTCCATGAAAGAAGATAGATTGGTGAGCGCTTTTTCAACTTTAAAGGAGACTGTGTATCATCTAATAAAGAACTCATTTACGTTAGATGATGGAGAATTATATTTTGATAATCATCAAGGACTGCAGCTCCTGGGAGATTTATTCCACACTCTTCTAAGGGAAACATCAATGAAAAACGAGACTGAAAATGATCTGGAGTTTCTTATGGTGCTGAATCAGTTGCTTTCCCATATGAACAGTTCTGAGGACCTTTTCAAGCTCAATCAAGATCTCCGGTCAGCTCTTCACCTCGTGAGAGAAACCTCCATAGTGATAGCACATTTCATGGACACTCTTTTAAGCTCTCCTGTTAAGGACTTCCGTGTGCTGTACCCTTCCCTCCAGGAAGTTATACTTGCAAATCTAACCGATTTGCTTTCCTTTGTAAACAATTCATTCCCCCTAAGGAACAGAGCAACATTAGAAATTACCAGGCACTTACTGGGTGTTATCTCAGGAGCAGGTGGAGGGAACTGTACCCCTGACCCACTCTTGGAGATGTCTGACACTCTGACCATGCTGGCCGACGATGGTGTAGAGATGAAAGGTCTTGCCACGTCAGTCACCTCCACCGTGAAATTTCTTAAGTTAGCCAAGAAAATCGCAAGAAAGGTGGCCACCATGTTTCAAACTCATCTCATTTCCATTGCCAATGACACCATGAAATTCTTTGACACTCTTTATTTTCTTTTGCTACAAAGTGTTCGAAATGTTGTCAATGAAATGATTACTTTAAAAAAGGCAGATCATTTAATATTTGAAAATATAGATGACTTGTTGATGCTATTTCTTGACTTGGCCTTTGGGATGATTGGAGTTAAGCCTAATATTTCCCAAGACTCAGATATCCTCAATATGTCATCTGGCATATTCACATACATGAACCAGTCCAAACATCTTTATGATATTAGGGAAGAAATAGCTGACTTTTTAACTTCTGTGAAAATCAATTTGGGAGACGTGGAACGTCTCCTGGCTGCATTTAAAAATGGGGCCCAAATATTTTCTGTGGATTCTGTCAATTTATGGGAAGAAATCCTTGATTGCTTAGTTCTTATAAATAACATCACCAGCCACATAGACTTCTTATATTCTAACCCAACTTCGACTCATAATTTCCCTCGAGATACAAAATGGGAAATAACTCATGAAGTAATCCTGTTTCTGCGTGAAATCCTGTCCCAAAACAGGACAGAGCTAGGGAGCTACTTGAGAACGGTGATCAACCTCATCTCGGTCACGCTTTGGAATGACACAGGGAAGGACCACAGGGGTGTTTTGAATCTGTTGCTGACATTGGCTCCGCATCCAGATGACCTTCTGAAACTCATCAGGACAGCGGCAGAGGCCTCCTGTGAAGCGTCACTTTTTAACACCTCTTGGATTCAGAACGTGACTGAGCAGCAACTCCAAGAAGCGATCCAGACCCTGCTGAGGAAAATAGCTCTCGTGAAGAAAGAGCTTCTCCTCAACAGCTCTCAGTGGACGCACTCCATGAGCACTTTGCTTCAGCCCTTTTTTGAAATTTTTATTCATGCAACCACTGGAACACATGAGAAGACCCAGAAAGAGCTGGTTGACATTCCCAACATCCTCAAACCATTATCACATTTTGAGAAATACCGGAAGGCATTGATCGCATTGGTTGAATACTGGCAGAGGGTCTCGCTGATTGATCAAAG
Seq A exon
GTAATGAAACACCCAATTTGTTTTATTCTGCCTGCCCGCACCACCCCTCCCCCGCCACAGTAACTATAAAACAGAAGCAGGCAGGAATCACACTGATCCAGGGTAAGTATAAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTCTGTGACCCCATGAATTGCAGCATGCCAGGCCTCTCTGTCCATCACCAACTCCCGGAGTACACTCAGACTCACGTCCATTGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTTCCCCCAATCCCTCCAGCATCAGGGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTAGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAGTTCTTTGGCGCTCAGTTTTCTTCACAGTCCAACTTTCACATCCATACATGACCACTGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTCAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCCCAAAATAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAATTGATGGTACCAGATGCCATGATCTTCATTCTCTGAATGCTGAGCTTTAAGCCAACCTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAAGGTGATGTTATCTGCATATCTGAGGTTATTGATATTTCTCTCGGCAATCTTGATTCCGGCTTGTGCTTCTTCTAGCCCAGCATTTCTCATGATGTATGTTCCTATAAATAAGGAACTTTTTAAACAGACTTTTTATATTCTAACCCAAATTCCACTCATAATTCCCTCAAGATACAAAGGGAAAGAACTCATCATCCTGTTTTTGCATGAAATCTTGTCATGAAACAGCAGAGAACTAGGGAGTTACTTGAGAATGGTGATCAACCTCATCTCAATCACGCTTTGGAATAGCATAGGGAAGAACCACAGGGATGTGGTCTTTGAGTTCAGCCTTCTTCTCCCTCTGACACTGGCTTCCACAGGAATGATTCAAGCCCAGTCCCTGCTTGCTATTTGACTAGTCAGCACTTAAATATGATTTGAATTTATTCCAAATCTTTCCATTCATTTTCCCCAAAAGTAAAAACCTCTCATTCTATTCACACATCCCAAGACTAGGTACCTAACTGGCATTTCTGGTCCCCTGCTCTGGCAGCCAACGGTCCTGCTACTTGATATGGAAATAGAGATTTGGGACCACTCAAGTCACACAGAAGTCTGCACTTTCAGTGGTAACTGCCCACTGGGCAAGGCCAGATTTCACCCCTCCTCAGATTCCATCCAAGACCATGTGGTTGACCCACACCCAAGCACCAGCCGCCCAGCCTGAATGGTGGGTCAGGGGAATGGCAGGTTCCTGGAAGGCCCAGTGCTATTGGCCGTCATGCTCTGGAGGCTGCCCGCTGCCCAAGGATGTGGGCGAGAGCAGATGTGCCCTGGCCCATCCTCTCTGTGTGTGACACACGGTTCCAGTGGTCTGTGGGCTCTGCGGTACCGATGGTTCTGTGAGCCCCAAAGGGAGATGGAAAGTGAACCCTCACTCACCTGCCAGACAGCCTGACCTGCTCTCCTCTATCCCTGTTGCCACAGGGCTGCACCTTGAATCCACTCCTTCTTAAAAAGTTGGAAGGGTCTCTCCTTGGATAGTGAAGCAGGTGTTTATTGGCATGAAGAGCTATTAATAGCAGTGCCTTGGAATTTGAATGCTGGCTTTCAGAGCCTCACTGTTTCTGATCCTAAACTCTGTCTGACTTGACACTTGTCTCCGAATTTTTATTTGAGCTGGAGGTGATTCCGGCAACCCCTGCTCCCCACCAGTCCTGGCTTTCACCCTGAAGTGTCCAGTCCTTCATGGAGGTACTTTACACCGTGGCCCCAAGACTGGAAACTAGTGGGCTGTGATCTGGCTGGGTGTGGTCATCCAAGGCACAGTGCCCAGTTTCATTCCACTTTAGTGATTCCTTCCTTCCACTATTTTTTCCCTGTCTTTTTGTTGTTGTTCGGTCACTCAGTGACTCTTTGTGACCCTATGACTGCAGCATGCCAGGCTTCCCTGTCCTTCACCATCTTCCGGAGCTTGCTCAAACTCATGTCCACTGAGTCGGTGATGCCATCTCCTGTCTTTACTTTTCTTTGATCACTGCCTTCTTGATGAGGAAGATACAAAAAGTCCAAGACAGAGAACCCCTCTGGTAGGGAGGGAATGCCAGGATTGTTGGCAACAAAATGATGCTCTGAATGAAAACAGGAGACCTACTGTCTCCTCGGCTGTGTCCTCTGATGTCTGTGGAGTGAGTGGCCCAGCAGTGGGATGGTTCTTTCACAAGTGTTACACATGCAGTCACTTAGAGAAGCTGGTCTTCACCTCTAATATTCCTGTCTGTTTCCCCCAAG
Seq C2 exon
TGTCTTGGATACCTGTCAGGCTTTCCTGCAGTCCCCGAAGCCCCCGGATGCTGTGGTGACCCTGTGGAGAATGGAGACGCTGGCCCAGCGCGTGCTCCTCCTCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003531:ENSBTAT00000061018:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]