MmuINT0007617 @ mm10
Intron Retention
Gene
ENSMUSG00000004668 | Abca13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:MGI Symbol;Acc:MGI:2388707]
Coordinates
chr11:9297082-9301369:+
Coord C1 exon
chr11:9297082-9298884
Coord A exon
chr11:9298885-9301259
Coord C2 exon
chr11:9301260-9301369
Length
2375 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TGTGATCTGTTTTTCCTAAGTGT
3' ss Score
7.3
Exon sequences
Seq C1 exon
TTTTGTCCCTAGAGATAAAATCCTTGAAATTCTGAAACTGGATCCGTTCCTTACCTGGATGAACAAAAACCCATTGATGAACATTTTCTCAGGTCTCAAGACACTATATTATCTGATTAAGAGCTCATTTTCATTAGACAACAGAGAACTCTCTGGAGTCCTGAAGGATTTATCTCACACCCATCCATGGGAGACCACAGTGAAAACTGATGCCGAAGGCCATTTGGATTTCTTTTCAGTAGTGACTCAGTTTCTCTCCCAGGTTAATAGTTCTGAGGACCTCTCCAAATTCAACCAAAATCTCAGGTCTGTTCTCTACCTTGTACAGGAAAGTTCTACAGAAATGGCTACTATTATTGACACTGTCTTACATTCAACTTCTGGGGCCTGCTACTCCCCCTATCCTATGCTTCAGCATAGCACAGTTGCTAAGCTAAGTGACTTGTTTTCTGATGTCAACAGTTCATTCCCTCTAAGAAGCAGAGAAATACTAGAATCAACTATGAGGCTATTTGGCACTATTTCCCAGGTTGGTGAAGAAAGTCATGTCCTGGAGTCAGCCTTAGAAATATTTAGAACTCTGACTATGCTGGTGAATAGCACTGTTGAACTAGGCCATCTTGCCTCAACTGCGGACTCCATGGTTAGACTTCTCAACCTAGCCAAAATTGTTTCAAGAAAGATGGCTACAATGTTGGGAACGCTCTCCATCTCTAGTACTGAGGACTCTGGGAAATTCCTTGACACTTTGTATTCCTTCATGCTACAAAGTGTTCCACATCATGTGAAGCAAATAACTACTTTGAAAAAAGGAGATCCTTTTATAGTTGAAAAGACAAAGGATTTATTGATACCATTTCTTGACTTGGCCTTTGGAATGATTGGAGTCACACCTAATGTATCACAGGACTCTGATGTTTTCAGCATGCCATTTAGCATACTTTCATATATCAACCAATCCAGAGACTTTTCTGAGACTTTGGAAGGAATGGCTGAAAACTTAATTTCTATAAAAATCAGCTTGAGAGATTGGGAGCATTTTGTGGCAATGATTAAAAATAGGACTCAAAATTTCTCTATTGATGCTGCTGACTTATGGGAAGAAATTTTAGGTTGTTTAGTCCCTATAAGTAACATCACAACCCAGATGGACTTCTTGAAGCTTTATGAGCTCTCTTCTACCAGCCATCCTCAGGTCCCGAAACAGGAGAGAACTCATGATGTAATCCGGTATTTGGATGGAATGTTAACAGATAACGGCACAGAAAGAGAGACTTTCTTGAAAATGGTGATTGACCTCACCTTACAAGCTCTTTGGAATGGCTTAAAGGAAGATAACTGGGATATTTTTAATCTCCTGTTGGCATTTGCCCAGCATCCAAATGATCTTTTAAAAGCCATAGAATCAGTTGTAGCGGTCTCTAGTGGAATCCACAGTGACTATCCAGATGATTTCAACCAAGATTCATTTTCTGATTTGTCACTGATTCAGAACACTACTCGTTATCAGCTTGCAAAGGCTGTCCTGATTGGTCTCGGCAAAGCAGGCTTCTCAAGGGAAGGGCTGCCCCTGAACAACACTCAGTGGACACATTTCACACGCACTCTGTTTCACCCAGATTACAACAGTTTTCCTAATTCAACCCCTCATCAGAATGTCACATCAGCAAAGGATGGGAGGACCAAGGATGAAATGATGGTAATTCTTCATGGCTCAGAGCCAATGCCATACCTCCAGAGATTCCTGAAGGCATTATTTGTATCGATTGAGCACTGGCAGGAAGTCCCACAAGCTGAGCAAAG
Seq A exon
GTATTTTTAATCCCTACTTCGTAATTTATTCTTCACTGTAGTACAGTAGCACTTGCATCACAAGAAGTACTCATATCAAACCAGATTAAGCAGTTTTCTCAATTTTAACTTTGTTACCCTTTGAAGCCAGTATTCACACACAATGATCCAAGTCTACGAATTCTTTCCCATGTTTGCCTCATTATTTGGCATCCCAGTATGATTTGGATTAAAATTTTTTTCTAAATCCAAAAGTAAAAGTCTTTCATTCTAGCCACTTGTTTTGAGACTGGATACACACATCACGTTTGAGAAGAAAGATTAACCACTGTACCTATGCATGTATTGCAACTCTAGCACTACTTTGTATTTCAGTAATATGTATTGTTATTATATGTCAATAAAATAATAACACAATGAATTGTAAAATTTTGACAAGTCAGGTGTGTTAGTCACACGTAGTCACAGCAGCCATAGGTGCCAGTATTGGGTATGTACTGATGAATGTGAAGTATCCAGTTCAGTCACAAGATGATGCTTGTAGTTGTAACCAACCATAGGAAGCAAACAGGCATCTAATGACTCCTGCCTGCCTTAAACTCAGCCCTCTAAGCCCTCCCATCACTAAATGCTAGATTAAAAGCCTGGCATTAGACTCACAATCCTCAACCTCCAGTGTATTAAAGTGTATTAAAGGTATTGCCACCATACCTTGTTGGAAACATTTTCTTAAAAGCTCCAGTGTCATGAAATCCAGCTCTGGCTTTAGCCTGCTTCTTTGGTCTGGAGGATTTGTGTCCTTTGATATACAGAACCCTTGGTTGCTTTCCCTACCTCAGCTGTGATTCCTGGATGGGGCAAGGCTAGCTATCCTGAGGTCCTTGTCTGTTTACTTTCCTCTCAACCCATGTGGCAATTTAGAGATGTTATGTAAATACTATCTCATTTGCCACCAGACAGGCTGCCCTACTTCCTGTTAGTTCTGTTGCTACAGAACTATCCGTTGAATATGGTAATTGTTTATGGCTTGGAATGATGTCCTTACTTGGTGAAACAGATGTCTCAGTATTTCACATTTTAAGTACTGGCTTCCAGGGACTCCTGCTTTCTTCCTTACTGTCTTTGATCCTCAACTACACTGCTTGAGTATCTTGTTCTGCTTGGGATTTTCTTTCAAACTGGAGGCAATTCTGGCCACTTCTGTTCTCTGAACTCAGGTTTCAACTGAGATTTTCAGTTCTCCAAAGATAAAACTTTCACTTTACATCAGTGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCTCCCTCCTTCCCTCCCTTCCCTTCCTTCCTCCCTCCCTTCATCCCCTCCCTTCCTCCCTCCCTCTCCCCCTCTCTCCATTACTTCTTCATTTCTTCATCTCCCTGTCTCTCTTCCTTCTCTCTCTCTTTATTTCTTTCTTCTTTTTTCTTTTTTCTTTTGAGATAGGCTCTTTCTACCTAGTCTAAGCTAGCCATCATCTCAAGAATCAGTCTGCCAAGAGCTAGATTGCAGGTGTGTACTTCAACATATGACCCAACATGTTTCAAAATTTACTGTTTTAATTTTAATTGAGATTTATTTATGGAGAATAAAATAGTTCTTTTATACATATGTATGATTGAATGATAACAATTGTGCCTTCAAACATTGAAACACATTTCTTTTAGCTCATTTGAAATTTACAATGTGTTACTGTTAACTGTACCCATCTCACTGTGTCATAGAACAATACGTTTTGCTCCTAGCTGGGACTCAGTCCACTCCCTAATCATCACTCTAGTCTTTAGAAATTATCCCTCCATTCTCAACTTCTATGAGATCAACTTGTTTAGAATCCACATGAATGATGTCATATGACATTTGTCATTTTTGTCCCTGACTTATTTCATTTAACACCATTGCCTTAATCTGATTACACTGTTACCGAGTCCTGGCTTTATCCTCTCAATGGTTGTCATCATACTTTAACCACTTTAGTGACCAGCTCTTGTATCTCAAGAGAATGAAAAAAGAAGAGAAAGCAGACACCAAATATATTAGCAGCACCAATCAAACTGCAGTAGGAGCAGAAAGCTGTCTGGAAGTCCAGCCTACTTACCTGCAATTTTCTTTTGCTTGTACAAAGTAAACATGGTAGTATCAGGTTGAGAGAGGAGACAGTTTTTACACGTGTTATAACTCAGCCTTCTACCCTGCTGTCATGCTTAGAGGTTACACACCTATCAATTAACACTGTGATCTGTTTTTCCTAAG
Seq C2 exon
TGTTTTTGAGATGTGTCAAGTTTTCCAGCAGCTGCAGAAGCCCATGAAAACTGTGAAGATGCTGCAGAGAGTGGAAATGATGGCTCTGCGGGTGCTCATTATCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004668:ENSMUST00000042740:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types