RnoINT0010019 @ rn6
Intron Retention
Gene
ENSRNOG00000025645 | Abca13
Description
ATP binding cassette subfamily A member 13 [Source:RGD Symbol;Acc:1305895]
Coordinates
chr14:89487582-89491840:+
Coord C1 exon
chr14:89487582-89489383
Coord A exon
chr14:89489384-89491730
Coord C2 exon
chr14:89491731-89491840
Length
2347 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
CATGATCTGTTTTTCTTAAGTGT
3' ss Score
6.67
Exon sequences
Seq C1 exon
TGTAAATTTGTTCCCAGAGATAAAATTCTTGAAAGTCTGAAACTGGATCCAGTCTTTACCTGGATGAACAAGAGCCCATCGATGAACATTTTCTCAAGTCTCAAGACAATATATTATCTGATTAAGGACTCAATTTCGTTAGGCAACAGAGAACTCTCTGGAATCCTGAAAGGTTTATCTCATGAAGATCCAAGGGAACCCATGGTGAAAACTGACACTGAAGGCCATTTGGACTTTTTTACAGTAGTGGCTCAGTTTCTCTCCCAGGTTAATACTTCTGAGGACCTCTCCAAATTCAACCAAAATCTCAGGTCTGTTCTCCACCTGGTACAGGAAAGTTCTGCAGAAATGGCTACTATTATGGACATAGTCTTACACTCAACTACTCAGGCCTGCCCTTCCTCCTATCCTATGCTCCAACACACCATGGTTGCTAAGCTAAGTGACTTGTTTTCTGTTGTCAACAGTTCCTTCCCCCTAAGAAACAGAGAAACACTAGAATCAACTATGAGGTTATTTGCAACCATTTCCCGAGTTGGTGAAGAAAGTCACGTCTTGGAGTCAGCCTTAGAAATATCTAGAACTCTGACTATGCTGGTGAATAGCACCACTGAACTAGGCAGTCTTGCCTCATCAGTGGACTCCATAGTGAGACTTCTCAGCCTAGCTAAAAAAGTTTCAAGAAAGATGGCTACGATGTTGAGAACCCTCTCCATCTTTAGTAGAGAGGACTCTGGGAAATTCTTTGACACTTTGTATTCCATTGTGCTGCAAAATGTTCAACGTCATGTGAAACAGACGTTGAAAAAAGTAGATCCTTCCATACTTGAAAAGACAAAGGAATTGTTGATACCATTTCTTGACTTGGTCTTTGGAATGATTGGAATAACACCTAATGTATCACAGGACTCTGATGTTTTCAGCATATCATCTAACATGCTTTCCTATGTCAACCAGTCCAGAGACTTTTCTGAGATTTTGGAAGAACTGGCTGGAAACTTAACTTCTATAAAAATCAGCTCGAGAGATTGGGAGCATCTGGTGGTGATGATTAAAAACAGGACTCAAAATTTCTCTAATGATGCTGGTGACTTATGGGAAGGAATTCTAGATTGTTTAGTGCCTATAAGTAACATCACAAACCAAATGGACTTCCTGAAGCTTCATGAGCTCTCTTCTACCAGGCATCCTCAGGTCCTGAAACAGGAGAGAAGTCATGATATAATCCGCTTTTTGGATGGAATGTTAACAGATAACAGCACAGAAAGAGAAACTTTCTTGAAAATGGTGATTGACCTCACATTACAAGCTCTTTGGAATGGCTTAAAGGAAGATAACTGGGATATTTTTAATCTTCTGTTGACATTTGCCCGGAATCCAAATGACCTTTTAAAGACCATAGAATCAGTTGTAGAGGCTTCTAGTGAAATTCCCAGCAGCTCTCTAAATGATTTCAACCAAGATTCATTTTCCGATTTGTCACTGATTCAAAACACCACTCGCTATCAGCTTGCAAAGGCAGTCTTGATTGGTCTCAGCAGAACGGGCTTCTCAAGGGGAGGGCTGCCCTTAAACAACACTCAGTGGACACATTTCACACATAGTTTGTTTCATCCAGATTACAACAGTTTTTCTAATTCAGCCCCTCACCAGAATGTCACACTAGCAGAGGATGGGAGGACCAAGGAAGAAATGATGGCAATTCCTCATGGCTTTGGACCAGTGTCATCCCTCCAGAAATTCCTGAAGGCATTATTTGTATCGATTGAACAGTGGCAGAAAGTCCCACAAGCTGAGCAAAG
Seq A exon
GTAATTTAATCCCTATTTTGCTTAATTTATTATTTTATTTATTGTGGTATTGTAGCACTCGACTCCCAAGAAGTACGCATATGAAACCAGAGTCAGCAATTTTTCTCAATTTTAACTTCCATTGTACTTTGAAGCCAGCATTCACACAGAATGATCCAAGTCAACAATTTCTTTTCCATGTTTGCCTCATTATTTGGCATGCAAGTATGATTTGGATTGATTTCTTTTCAAATCCCAAAGTAGTCACTTGTTCTGAGACTGGATATATGCGTCATATTTGAGAAGATAGATCGACCACTATACTTATGCATATATTTTGGCACTAGCACCACTTCATATCTCAGTAGTATGTATTGTTATTATATGCCAATAAAATCATAGAATAATGAATTGTGAAATACTGACAAGTCAGGTGTGCCAATCACATATAATCACAGTAGCCGCAGGTACCACTATTGGGTGCGTAGTCATGAAAGTGAACTATCCAGTTCCGTCACAAGATTTCGCTTGCAGTTGTAACTAACCATAGGGAATGGCTAGGCAGCCAATGACTCCTGCCCTCCTTAAACTCAGCCCTCAGTGATGATTCGCTTCTAACCCCTCCCATCCCTAAATGTTAGATTAAAAAACAGGCACTAAACTCACAATCTGAAACCTCCAATGGACTACTATACCTTGCTGGAAACTTGTTCTTAAAAGCTCCAGTGTCATTAAATCCAGCTCCAGAATTAGCCTGCTGCCTTGGGATGGAGGATTTGTCTCCTTCGATGTACAGAACCCTGTACATCAGAATGCTCTCCCTGACTCAGCTGTGATTCCTGGAAGTGAGAAGGCTAGCTATCTTGTGGTCCTTTCCTGTTTACTTTTCTCTCAACCCCAAGTGGCAATTTAGAGATGTTATGTAAATACTACCTCATTTGCCACCAGACAGGCTGACCTACTTCCTGTTAGTTCTGTTGCTACAGAACTATCATCTGAATGTGATAATTTTTTATGGCTTGGAATGATGTCCTTACTTGGTGAAACAGATGTCTCATTATTTCACATTTTAAATGCTGGCTTCCAGGGACTCCTGCTTTATCTCCTCACTGTCTTTGATCCTCAACTTCAGTGCTTGAGTGTCCTGTTCTGCTTGGGATTTTCTTTCAAACTGGAGGTAATCCTGGCAACTTCTGTTCTCTGAACTCAGCTTTCAACAGGGATTTTCATTTCTCCACAGATAAAACTTTCACTTTACATCTATATACCCTTCTTTTCCTTCCTTCCTCCCTCCCTTCCTTCCTTCCCTCCTCCCGCCCTTCCTCCCTCCCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCTCCTCCCGCCCTTCCTCCCTCCCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCCCTCCCTACCTTCCTCCCTCCCTTCTTTCCTTCCTCTCTCTCTTCCTTTTCTCCCTTACTCCTTCCCTTCTTCATTTCTTCCTCTGTCTCTCCACCCCCCTTTCTTCTTCTTTCTACATAGCCCAGGCTAGCCAGGATCTCAGGAGCCGGTCTGCCAAGTACTAGATTGCAGGTGTGTACTTCAACATATGACTCAACATGTTTCAAACATTTTCTACTTTAATTTTGATTGACGTTTATTTACGGGGAATGAAGTAGTTTTTTCATACATATGTATGATTAAATGATTACAATCATGCCTTCGAACATTGAAACACATTTCTTCTAGCTGTTTCGAAATTTACCATGTGTTACTGTTAACTGTACCCACCTCACTGTGTCATAGAAAAACAATTTGTTTTGCTCCTAGCTGGGACTCTGTCTACTCCCTAATCATCACTCTAGGCTTGGAGAAATCATCCTTCCATTCTCAACTTCTATGAGATCAACTTGTTTAGAGTCCACATGAGTGATGACATATATGACATTTGCCACTTGTCCCTGACTTATTTCATTTAATACCATTGCCTCCATCTGACTACACGGTTACTGAGTGCAGGCTTTTATCCTCTCAAAGAATGTCCTACTTTAACCACTTCAGTGACCAGCTCTTGTATCTCAAAAGAATGAAATAAGAAGAAAAAGCAGATACCAAGCGTCTCCAGCAACAGCCAAACTGCAGTAGGAACAGAGAGCTGTCTAGAAGTCCAGCCTCCTTACCTGCACTTTTCCTTTGCTTATGCAAAGTAAACCTGGTAGCACTGGGTCAAGAGACAGTCCTTAACATGAGTTACAACTTAGCCTTCTACCCTGCAGCCATACTCAGAGGTTGCGTACTTATCCATTAACACCATGATCTGTTTTTCTTAAG
Seq C2 exon
TGTTTTTGAGATGTGTCAAGTTTTCCGGCAGCTGCAGAAGCCCATGGAAGCTGTGGAGATGCTGCACAGAGTGGAGATGATGACTCTGCGGGTGTTCATAATCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025645:ENSRNOT00000035612:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]