BtaINT0010958 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003531 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr4:7362354-7365512:-
Coord C1 exon
chr4:7365183-7365512
Coord A exon
chr4:7362424-7365182
Coord C2 exon
chr4:7362354-7362423
Length
2759 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CTCCCTCAATCTGCGGGCAGTGC
3' ss Score
6.37
Exon sequences
Seq C1 exon
TACATGAGGATGATGGGCGTGCACCCGGCCGTCCACTTCCTGGCCTGGTTCCTGGAGAATGTGGCTGTGCTGACGGTGAGCAGTGCCGCCCTGGCCCTCGTCCTCAAGGTCAGCGGCATTTTCACCTATAGCAGTGCCTGGATCGTCTTCCTCTTTCTCCTGGACTTCGCCGTGTCAGTGGTCACGCTGAGCTACCTCCTGAGCGCGCTGTTCAGCCGCGCGAGCATGGCCGCCCTGTGCAGCAGCCTGCTGTACACGGCCAGCTTTCTGCCCTACATCGTGCTGCTGGTGCTGCACGACCAGATGGGCGCCACCCTGCAGACGCTCCTG
Seq A exon
GTAAGTGTGTTGTCACTCAGTCGCCCATTCGTGTCTGACTGTTTGAGACTCCACAGACTGCAGCACACTAGGCCTCCCTGTCCTTCACCATCTCCCAGCGTTTGCCCAAGTTCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTTGTCCCCTTCTCTGGTCTTCAATCTTTCCCAGCATCATGGTCTCTTCCAGTGAGTTGGTTCTTTGCATCAAGTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCTTTCCAATGAATATTCAGGGTTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCTGTCCAAGGGACTCTCAAGAGTCTTCTCCAACAACACAATTCGAAAGCATCAGTTCTTCAGCGCTCGGCCTTCTTTAAGGTCCAACTCTCACATCCGTACACAACTACTGGAAAAACCATAGCTTTGACTAGATGGACATTTATCGGCAAAGGGATATCTTTGCTTGTTTAATATGCAGTCTAGGTTTATCCTAGCTTTCCTTTCAAGAAGCAGTCATCTTCTAATTCTGTGGCTGTAGTCCCCATCTACAGTGATTTTAGAGCCCATGAAGAGGAAATCTGGTAAGTGTGCTGTGCTGTGAAACTGCAAAACAGGACTGCGTGTCCCCGGCAGCACACAGCCCACGCTCTCCACGTGTCAGTGCACCGTTTCAGCTCTGCAGGGCTTCCCACCTCCCATGGCCTGTCCTCCCAGCTCAGGGCAGCCTTGCCATGGGTGGGGCCACTGAGACCACAGAGGACGGCCTGTGAGAGACCATCACTCGTTACATGACGGGGACTGTCCTCTGAAGACTGTTTCACTCAAGAGCATCTTAAAGGAAGCCCTTGAGTCTGTGTCTCTTTATGTGGAATGAAACAGATTTCCAAAGCTATTTTAGAAGTAAGAAATACACATTTTTCCTTGAAGTATCACGAATTACTTTGCATTAGGTGGAAAGAACTCTCCTTTGGCAGCATCAGTCATTCATTTAGAATGTAGCTCTCAAAGCATTAGAATACTTGCTGGTCTGTGATATAAACACTCAGAAGACAGACACTCATCTGCTTTTTGATGACGCCTGGCAAGCATGGTGCTGACACACAGCAGAGACACAGGGCAGGAGCCCCCCACTGGAAGGGAGGAGGAGCTGGGGTTAAAGGTGTTGTTGTCATGTCATGCAAACCTCCCACATGCTCAAGGGCAGGGCAGGTCCTCCCCACAGGCCGGGGAGTGTGATTGGAGTCCCCCAGCTGGAGGGAGGATCTGAGGAGGGACCAGGGGGAGAGTCAGGCAAAGACAGAAACCTCCAGGTGCTGTATGTTTTCTCTTGAATGTGGAATCCAAAATATACAACAAAGGACCATATAACAAAGCAGAAGATGACTCATGGATACAGAGAGCAAACTAGTGGTTACCGGAGTGTGTGGTGGTAAGGGAGTGGAGGGAGGTGTAAGGGAGGGTAGAGGATTAAAAGGTGCAAACTGCTAGGGACCAAATGAACATTCCGAGGATGTGACATACAACACGGGGAACTCTATGTGGAATATCATCTGTAAAAGTATTGAATCATCATGTTGTACACTTGAAACCAACAGAATACTGTTAAGTCAACTGTGCTTAAGTTATTAAGAAAGACTCCCAGTGCTGCCAGGGGATGACCAAGGCCTTCAGAGGTCTCCCGGCCCCCTCACTGGGGCGGGGGTCACAGTCTCTGCTCATTTCATGCCTCAGAGTAAAATATCAGTGCTTCCAAGAAAACGGAATTATTTTTCTCTAACATCAGTACGCCCTTCAAACCAACCTGGTTTCCGCAAGTCATAAGCATAGACGGGCACGGTGTTCATCAGTATTTTACCCCCTGGTACGTGCTTCTCAGTCGAGATTAGTTTGTGTCCTGCCTGTAGTCATTCATAACCAGTCATCTTGTGTGTTAAATAGGTGTTTGCCGAATAGTGGAAACACCTGGGACCCGCCCCCCCCGCCTTCCCCCCCCCCCCGGTGCCCCCCTCACATACTCCTTACATGGGGAAAACAAGCCATCGGCCAATAAAACATCCGGCCTGTAAAACTCAACAAAACTTGAGTTTCAAGTGATGTTTTTTGTTTTTTATTTCAGTCCTTAGATTTAAGATTTTATGTACATGAAGGCTGATTTCCTTTTTATATGCTGAAATTGCTTCTAGCAAATAAAAAGTCTGACTCCTGTACATTATATTTTTAAATGTGAGATACTTTTCCAGTAAGGTTTTTTTTTTTTTTTTTCCTTAAACACAAGACCTTCCACTTGAGATGAAATAACAGTTTTCCTCCAATGCACCCTCTTCTCACGTAGAATCGTGTGTGTTCGGCATCCAGTCTGCCTTCAGTGTGCTCCAGGGCCTTCACTTAATAATAAAACACAGTGAATTGCTCTATTCCATTTTCCACTGTTTGGTGTTATAGGTTTCTGTGTATAGTGCGTTGGATTTATGACACTTCAAACACTGCAGTAAAGAGAAGTAATTCCTTTTAACATTAAAAACTGGCTTGTTGTCACACTTTTCAGAACGGAATGATGCGTGGCCCAGTCCTGGGTTCAGACGTTGGAACCACCACCTGGAGCGGTGGTTTACATCATTCGCGCCTGAACGTGCAGTGGTTTCTCTCTTTGAATTCAGTGCTGTGGATTTTCCCTGGTCCCCAGTCAAGCACTAACTCTCTGTTTTTCTCTTCTCTCCCTCAATCTGCGGGCAG
Seq C2 exon
TGCCTCCTCTCCACAACCGCCTTTGGACAAGGAGTGTTTTTTATTACATTCCTAGAAGGGCAAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003531:ENSBTAT00000061018:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(32.9=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]