GgaINT1005102 @ galGal4
Intron Retention
Gene
ENSGALG00000013079 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr2:79983254-79985371:+
Coord C1 exon
chr2:79983254-79983306
Coord A exon
chr2:79983307-79985315
Coord C2 exon
chr2:79985316-79985371
Length
2009 bp
Sequences
Splice sites
5' ss Seq
CAATTAATC
5' ss Score
-7.85
3' ss Seq
TTGTAGTGTCTTCTCTCTACAAC
3' ss Score
-0.18
Exon sequences
Seq C1 exon
CTTAGTTCTACAATGGTTTTATATGAGCAGTGTATCTTAAAAAGTATGTCCAA
Seq A exon
TTAATCTAATTTTTGCCTGGAAAAACTTGAGCAAATTATTGTCATGGCTGTTTCCTCTTGCAGTGTCTCCTGTTTATGCCAAATTTGATAAATGTACCAAATTTTTTAGATGCATTTTTTTTTCTGAAAAAGATTTAGAATTAAGGTGGTCTGTTTTCCTTTTGGTGAAAAATACGGTGGGTTGCAACTGCTGTAACCCCAGAAGCAGAAGCAATTAGGTGACTAATTAATGCAATTACCTACTGTGAGATAGAACAATTCATCTTAAGTGTTGAGGCATTTCACATTTGTTCTGTGAGCGCTCTTAGCATAAACCATTTGCACAGACTCAGGTTGCTTAATGCCAGTAAGCAGTAGATGTACTGTGCATCTTTATCTACCACAGATCATAACAGGGATTTCAATGTTAATAGAACAACTATATTTTATATGTAAATGTTGCTAGTCATCGCTTAAAAGATGAATGTAGAAATCCAGCCCTCTTGCTGTTGAATCACAATCATCCCAATCTCATTGTTTTTGCAGGAATGTGATTTTTCTATTGAGAGCAGCTGAGGATTAGATCAGGAATTTGTCTAATGGTTTTCTTGTTAATACAGTTGAAGATACATTTCCTTGCCACTGCTTCATATCTATGTCCTTTCTTGTTTTTTGTATGCTATCAACATACAAAATGCCTTTGTACTGTCTTAAAGTACCATATCCCAAGTTGGACATCAAATATCAACATAAAATGGAAACTGTATTTCACACTTTATGGCTTTGTTCCTTTAAAAGATATACACATGAAATTACATTAAGATGATGGAACACTTCACAATATGTTAAAAATGGAAAGTGTTTTTCTGCTTGGTACTTTCTGTTTCAATTGGTTAGATAAAATATATCAACTCTTTGCATAAATGTAAGTGCAAATGCAAGACTGCAGTATTCAAGCATAAAATGGCACAAAGAATTTCTTGTTATTTTGTCATTTTCTCTCCTACGGGGAGAGAAAAGTAGACATCAGATAACTTGCACAGTTTAAAATCACTGTTATTGCAAAATAACTCATACGCTGCAATTGCTGACAATCATGCAGCAACATGTGAAAAATGGGATGGAATTTAAAGAGAGGGAAGAGGCCATCAAGTGGGATGCTAGAAATTTGGGAATATAAGAGGCAGGGGCTCAGTTAATGGGAATTAGTATGCAGTCCATGCCACTGATGATTTTTTTTTTTAAGTAGCAACCCATGCCATAGTTGGCATAGTTGTCAGATAGCTGGCAGGATGAGTGTCTTTTGTGTTAACTGTTACAGAAACCTTATTTAATTGATCTGTTTTAAAACAGGAGATAAAATGAACTTTAATCTCACTTTCAAACTATAGAATGTTATCTTTGAACGATGCTTACTAATTTTTTTAATGCTTTGAATCTTCCCATCAGTCTTCACAAAGTTGTCAGTGTTTTTACATTGACGATCAATCTTACTTTCATTTTATATTGCATCACTGAACTCAGTAATTTTCCATTTTTTACTTTTCTCATACTACATATTTAATTTATGTTGCTTCTTGGAAGTTATTTCCCTCAGAAGAATGCTATCTCAGCAGATAGTACCCTGTGCACATGTTCCTGCTATCCTTGTCTCTTGCTGAATTCTGACCTTACAAAAATGCATAGAACCACCGTTCTTACTGCAGAAAGTATTTTGGTTTGCATGCTGTTATATATTTTCAGTATGTGGTGGACTTGTGGTGGTCTAAAACTTGCAATAAAATTAACTATTCTTTCCATTATTGATAACTAGGTCAGTGAAGCTCTTTAAGGTGGTGCAAATACCACTCAGGTATGTTGAGGAGTAGTGTTAAAATGTAAAAGGAAATAATGACCACTAGTCTATTTGAAACAGAGGCCTATTTATTTTCTGCTTGCTTTTAGTTTCATGAGTTTCATAGCAGTTGAAAACGAATTATTTGATGCTCATATCCTATTTCTCCTCTGGTGTTGTAGTGTCTTCTCTCTAC
Seq C2 exon
AACGGCCTTTGGGCAAGGAGTGTTTTTCATTACATTCTTTGAGGGCCAAGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013079:ENSGALT00000021357:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.2=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]