BtaINT0011126 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61915700-61916011:+
Coord C1 exon
chr19:61915700-61915817
Coord A exon
chr19:61915818-61915919
Coord C2 exon
chr19:61915920-61916011
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGCTGGT
5' ss Score
0.71
3' ss Seq
TTTTCTTCTCATTCCCTCAGGAG
3' ss Score
11.07
Exon sequences
Seq C1 exon
AAACCAGCCATTATGGTCAATAATCTGCATAAAGAATATGAAGACAAGAAAGATTTTCTTCCTACAAGAAAAGTAAAGAAAGTGGCAAATAAATATGTCTCCTTCTGTGTGAAAAAAG
Seq A exon
GCTGGTATTTAATTATTTTTTTCTTAAATAACTGTCGCAGAAGAGTAATTCTCATTTTTCAGTTTGATTTGCATTTGATGACTTTTCTTCTCATTCCCTCAG
Seq C2 exon
GAGAGATCTTGGGACTGTTGGGTCCAAATGGCGCAGGCAAAAGCACGATTATTAATATCCTGGTTGGTGACATTGAGCCAACTTCAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747:ENSBTAT00000003563:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(6.8=25.0)
A:
NA
C2:
PF0000522=ABC_tran=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCATTATGGTCAATAATCTGC
R:
GCCTGAAGTTGGCTCAATGTC
Band lengths:
204-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development