RnoINT0010298 @ rn6
Intron Retention
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98583275-98583578:-
Coord C1 exon
chr10:98583461-98583578
Coord A exon
chr10:98583367-98583460
Coord C2 exon
chr10:98583275-98583366
Length
94 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
TTTTTCCCCAATACCTGTAGGAG
3' ss Score
7.49
Exon sequences
Seq C1 exon
AAACCGGCCATTATGGTATACAATTTGCATAAAGAATATGATGACAAGAAAGATTTCCTTCACTCAAGGAAAACAACAAAAGTAGCAACAAAATACGTCTCTTTCTGTGTGAAAAAAG
Seq A exon
GTTGGTATTTATTTTTCTTAAGAAAGTTTTCCAGAAGAGTAATTTCCGATTTTAGTTTGACTTTAATATATAATTTTTTCCCCAATACCTGTAG
Seq C2 exon
GAGAGATCTTGGGACTGTTGGGTCCAAATGGTGCTGGCAAAAGCACGATTATTAATATTCTTGTTGGGGATGTTGAACCAACTTCAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378:ENSRNOT00000005848:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(6.8=25.0)
A:
NA
C2:
PF0000522=ABC_tran=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCCATTATGGTATACAATTTGC
R:
AATAATCGTGCTTTTGCCAGC
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]