BtaINT0011138 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61887349-61888913:+
Coord C1 exon
chr19:61887349-61887517
Coord A exon
chr19:61887518-61888854
Coord C2 exon
chr19:61888855-61888913
Length
1337 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TAGTAAATGGTGTTTTTCAGAAT
3' ss Score
5.4
Exon sequences
Seq C1 exon
GAGAATTTGGCTTACGGAGATCATCATTTTATTTTCTGAAGCCATCATATTGGTCAAAGAGCAAAAGGAATTATAAGGAGTTATCAGAGGGCAACGTGAATGGGAATGTTAGTTTTAGTGAAATTGTTGAGCCTGTTTCTTCAGAATTTATAGGAAAAGAAGCCATCAG
Seq A exon
GTATGATTTAATCTCTGGCAGTTTAGGTCTTAAGAACTGCTGATGGGACATGCCATGTGTAAATCCTGTCTTTTATGTAATGTATGTAAGCATGGTATTTTAGGAGATTTGGTGCACATTTTGTGATTTTTAAAAAACAGTATCAAGGGCTAATTCTCTTTTAAGTTTTTATTTTCTTTGTAACCATTTAGAATAAATTTGCTGCTAGGTTTGACATTTTACGTTTGAATAGAAAATTTTTTAATAAAATCTAGTATTTATAAAATTAAGCCATTTTAAAATTTCTTCATTATATAAATTAAGAGGGATTCACTCATAGCTTAGTTGATAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTCAATTCCTGGGTTGAAAAGATCTCCTGGAGAAGGAAATGGCAACCCACTCCAATATGCTTGCCTAGAAAATGCCATGGACAGAGGAGCCCGGTAGGCCACAGTCCATGGGGTCTCAAGAGCTGGACACTACTTAGCTACTAAAACCATGTAAATTAAAGCAATAGATACTAGTTTTCTATTTCTGTTTGAGCTGCATTGTCTGAGACATGCCGGACATTAAACTGTGCTGTTAATTTGATAGACCCTTAGAAACTGTGACATAATTAACTTGTCACACCAGCTTAATTTCAGAGAACCAGAGAAATTCATAACTATTCCTTACTAGTTCAGTCAAAACCAAATTTAAAAAAATAAGGAGAAGGAGAAAAGAGAGAAAAGTGAAAGAAAAAGTATAGTTTGTGTTTTTTAAATTTAAGAAAAACATATAAATGCAAAGGAGAACTAGGTATTTAAGATGCAATCAGTGGACTGGTGGTCAGCCTTCTTAAGAGTAAAAATTAAACTAATGAGCAAGACTGTTAATTCTTTAAAAAATTATGTAAAACATTTAAAGTGCAATGAGAGAATCACTTCGAGACAGTTTGAAACATGTACTGATGTGAAATAGCATCTGATTTTTAAGCTCTCTTAACCGATATGACAAGTATTAATTAATTACAAATGGAAAAGAATCAAATATGAAATAAGAAATCTGTAAATTGCTTAAGTCAAATGTTTCAGTTTCTTTTTAGAAGTTGGCTTGTCATGAAAAATGAATGAATTACACTTAAAATGGAGAGAAGTAATATACTCTTTTCTTATAGTTTCTTTAAAATACTTTTATTATTGTTGCCAGGTTTCTTTGATTTATTGTTTTAGTAGGAAGATACTTCATTCCCGTTAAATATGACAGCTTTGCTTAAAAGTATCATGCACAGAGATACACACTTGGAGATTGCTTTAAATACTTAAAGTAGTAAATGGTGTTTTTCAG
Seq C2 exon
AATCAGTGGTATTCAGAAGACCCACAGAAAGAAAGGTGAAAATGTAGAGGCTTTGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747:ENSBTAT00000003563:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGCTTACGGAGATCATCA
R:
TCTCAAAGCCTCTACATTTTCACCT
Band lengths:
222-1559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development