RnoINT0010275 @ rn6
Intron Retention
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98616791-98617641:-
Coord C1 exon
chr10:98617473-98617641
Coord A exon
chr10:98616850-98617472
Coord C2 exon
chr10:98616791-98616849
Length
623 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TATGAATCTGTGTTTTTCAGAAT
3' ss Score
8.67
Exon sequences
Seq C1 exon
GGGAATTTGGCTTGAGGAGGTCATCTTTGTACTTCCTAAAGCCATCATATTGGTCAAAAAACAAAAGGAACTATAAGGAGCTATCAGAGGGCAACATCAATGGGAATATTAGTCTCAATGAAATTGTTGAGCCCGTTTCTTCAGAATTTATAGGAAAAGAAGCTATAAG
Seq A exon
GTATGTTTAAGCTTTAAGTATAGGTAGAACTGTTGGTGGGAATTGTGATATTTAAATCTATGTTATACCACCATAGAGGATTTGGGATGAGAAAATCCACATTGTAGGCAGTTTGGTACTGCTTACAGGAAATGATATCTAGTTTGTATCCCCTTACTAATGTAAGAAGCATTTGATTAATGAAGGATGAAACAAGTGCCTCCCTTCAGTTGTCTCAGGCTGAGACGAGTGGGCTCAGCCTACAGGGAGCCAGGAGTCCCATTTCTGTAGCGTCTTTAGACACGCGTGTCCTCAACGTCAGTGTTACTTGGCTCTTTGTTTTAGCAGGAAGGTAGTTTATTATTTTTCCTATTAAGTACTTCAGCCTTTTCTCCTCTATATTTTGTAATTTCAATATATCCCTCCAGTTCCTCCCATCCAATTTTTCTCCTCAAATGTGAATAACTGTTACCTGACTTTGTATGCAACCCTGTCTTAATAGTGTGTAAAGTGTCTCGTATTGCTAGAGATGTGAAGCTAGCTCAAAATTTAAAACAAGGCAGCTTGGATAGAAATATATGTTAACACAGGTGATTATAAAATTATATATATATATATATTTAATATGAATCTGTGTTTTTCAG
Seq C2 exon
AATAAGTGGTATTCAGAAAGCCTATAGGAAGAAGAATGAGACCGTGGAGGCTTTGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378:ENSRNOT00000005848:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(1.4=9.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATTTGGCTTGAGGAGGT
R:
AAGCCTCCACGGTCTCATTCT
Band lengths:
222-845
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]