BtaINT0011144 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62059721-62061215:+
Coord C1 exon
chr19:62059721-62059859
Coord A exon
chr19:62059860-62061124
Coord C2 exon
chr19:62061125-62061215
Length
1265 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
TCTTGCTTCTTTCTGCTCAGATA
3' ss Score
8.93
Exon sequences
Seq C1 exon
GTTTTGCTATTAGATGAGCCAACTGCGGGATTGGATCCTTTCTCAAGGCATCGAATATGGAACTTCCTCAGGGAGCGCAAAGCAGACCGCGTGATCCTCTTGAGCACCAACTTGATGGATGAAGCGGACATGCTGGCTG
Seq A exon
GTAACTGTGACTTTTATCTGAGTCTGACAGTGAAGAATTTGGGAGACATGGATTCCCAGGGCAAGACTGCTGCCCTTGTTCCCTCAGCGTGTCTGTATTGTACAGGAGTCTGGGGAATGACTGCCCTCTAGTCCCCCTGTAGAATTCCTCACCAGCTCTGCACATGCTGGACTGTGAGCGCTAATGAAAAACCGTGTTGACAGCTTTTCAGATCAGGTCTTGGTTAATTTCAGCATCCCAGTCTTCTTTTATGTCTATTTGGTTGAAAAATGTCGAAAATTTTTTATCATCCAGAGTAGAAAATATGCTTATGGAATTTATGGTTTGTTTATTTTTTTTCAAGAAGTATCAGAAGCCACTGAAGTAGACTGGAATGCAGAAGCTCATTTTTTTATTAATTTAATTTTTTAACTTTTTTTCTTCTATTGGAGTATAGTTGAGCAGTTTTGTAATAGTTCCAGTTGCATAGCAGAGAAATTCAGCCAAACATACCAGTTCAGTTCAGTCGCTCAGTCGTGTCTGACTCTTTGCAACCCCATGGACTGCAGCACGCCAGGCCTCCCTGTCCATCACCGACTCCTGGAGCTTGCTCAGACTCATCTCCATTGAGTCAGTGACGCCATCCAACCATCTCATCCTCTGTCATCCCCATCTCCTCCTGCCTTCAGTGTTCCCAGCATCAGGGTCTTTCCTAATGAGTCAGCTCTTTGCATCAGGTGGTCAAAGTATTGGAGTTTCAGCTTCAACATCAGTCTTTCCAGTGAATATTCAGGACTGATTTCCTTTAGGATGGATTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAGCACCACAGTTCAAAACATGTATTTATCCATTCTCCCATGCAGAAGCTCATTTTATTTACTTTTAACTTTATTTTATACACAATAATAGTTTTAAATTTTTTTAAACATTAAGATGATTTTGTGTTGGGGTATAGTCGATTAACAGTGTTCCGATAGTTTCAGGCAAACAGCAAAGGGACTCAGCCCTACATACACGTGTATCCTTTCTCCTCCAAACTGCCTCCCTTCCAGGCTGCCAGAAGCTCATTTTAAATGCGTGCATTTCAGTGCACGTTTCATGTTTTTAAAAGCCCGTGAGATGGAGTTAGGCCCCACAGGACACTTCTTCTTTGGAAATCTGAGTCCTGGCACCGCCCCCCATTTTTTCCACACAGTGAGGAGGTGATGACCCCGTCTTCCCTGTCTTGCTTCTTTCTGCTCAG
Seq C2 exon
ATAGGAAAGTGATCCTGTCCAAAGGGAGGCTGAAGTGCGCGGGCTCGTCTGTCTTTTTGAAGCGAAGATGGGGTCTCGGCTATCACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921:ENSBTAT00000009089:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTGCTATTAGATGAGCCAACTGC
R:
CTTAGGTGATAGCCGAGACCC
Band lengths:
230-1495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development