BtaINT0011162 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62086637-62087152:+
Coord C1 exon
chr19:62086637-62086728
Coord A exon
chr19:62086729-62086973
Coord C2 exon
chr19:62086974-62087152
Length
245 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCG
5' ss Score
5.65
3' ss Seq
AAACCAGCACACTTTCTCAGGTG
3' ss Score
2.42
Exon sequences
Seq C1 exon
GAGAAATTTTGGGGCTGCTGGGACCTAATGGCGCTGGTAAAAGTTCATCTGTTAGAATGATATCTGGGATGATGACGCCAACAGCTGGAGAG
Seq A exon
GTAGCGCAAATGAAGATGAGGTTTCCGTTCCCCAAATAGACGTGCTATAGTAGAGGTGATGTCCTTGTGAGGCTGTACTGTGAGTAGTTTAAGTAGTTTTCTGTAATAAATATACAGGGTAACTGCTGTAATATTTCTTCCATGTTCAAAAACTCGAGGCATTCATTAGTCACAAGTCAGTTTCTTGAGGAATCACGTGGCTGAAGACGGGCTTGCACGTTTCTGAAACCAGCACACTTTCTCAG
Seq C2 exon
GTGGAGCTGACGGGGTACGGTTCGGATCCGGATCAGCAGGGGGACATCAGCATCCGGTTCCTGGGCTACTGTCCCCAGGAGAACGTGCTGTGGCCCAGCCTGACCACGCGCGAGCATCTGGAGGTGTTTGCTGCCGTGAAAGGGCTGCGGCGAGCGGACGCCCACATGGCCATCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921:ENSBTAT00000009089:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(20.4=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(40.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATTTTGGGGCTGCTGGGA
R:
CGTGAGATGGCCATGTGGG
Band lengths:
269-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development