BtaINT0011202 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45176872-45177401:+
Coord C1 exon
chr7:45176872-45176987
Coord A exon
chr7:45176988-45177256
Coord C2 exon
chr7:45177257-45177401
Length
269 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TGGCTCCTGTTCCCCCTCAGCTG
3' ss Score
8.53
Exon sequences
Seq C1 exon
TGTAACTACTTGGTGTCAGCCTGCATCGTGGTGCTCATCTTTTTGGCCTTCCAGCAGAGGGCGTATGTGGCCCCTGCCAACCTGCCTGCCCTCCTGCTGTTGCTACTACTGTATGG
Seq A exon
GTGAGGTTCCCAGCCCCTCCAGGACTTGTTCTCCCTCAACTCTGCTGAGGGAGCTGGGACTCTATAGCAGATCCTAAGGAGAGGATATGGAGATCTGAGAGGACTCCAAGTGTGATCTTATTCAGGGGTATGCCAAGGAGGCCTTAAAAGCTCATCTTGACCTGACCATGTTACAGAGGTCTACAACACAGTTTGGGATGGGAGATCTATATTCTTCTCAGGGCTGCTCAGCCTGTCTGGCAATAACAGTGGCTCCTGTTCCCCCTCAG
Seq C2 exon
CTGGTCGATCACGCCACTCATGTACCCAGCCTCCTTCTTCTTCTCCGTGCCCAGCACAGCCTATGTTGTGCTCACCTGCATCAATCTCTTCATTGGTATCAATGGCAGCATGGCCACCTTCGTGCTTGAGCTCTTCTCTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.9=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACTACTTGGTGTCAGCCTGC
R:
CTGATCAGAGAAGAGCTCAAGCA
Band lengths:
260-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]