BtaINT0011219 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45167959-45168467:+
Coord C1 exon
chr7:45167959-45168075
Coord A exon
chr7:45168076-45168299
Coord C2 exon
chr7:45168300-45168467
Length
224 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CTTCTCTGACACCCCTACAGAGG
3' ss Score
6.37
Exon sequences
Seq C1 exon
GTCAACCGAACTTTCCAGGAGCTGGCGCTGTTGAAGGACATCCAGGAGGTGTGGGGGCTGCTGGGACCCCAGCTCTTCAACTTCCTGAACGATAGTGCCAATGTCGCCATGCTACAG
Seq A exon
GTGGGGCCAGGACAGGAGTGGGAGAGGGGTGTGGGGGGCAGGGGTGTGTGGCAGCAGGGTCACCCCTGATGAGGATTTGGGAGAAGGGCAGGGACTTCCAGGCGAGGGTGTGGAGGTGGGGAGTGGTATCCACGGTGAGCTCAGGCCGCTCACTGGGATGGAAAGAGGGGTAACAGGCCCTGAACGTCCAATGCAGACCCCCATCTTCTCTGACACCCCTACAG
Seq C2 exon
AGGCTCCTGCAGATCCAGGACAAGGGAAGGAGGCAGCCAAGACCTGGAGGTGGGGCCAGAGTGGAAGCTCTTCGTGCTTTTCTGAATCCCCGCAGCGGTGGCTACAGCTGGCAGAAGGCCCACGCTGATGTGGGACACCTGGCGGTCACACTGGGCCGTGTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCGAACTTTCCAGGAGC
R:
CTCCATCACACGGCCCAGT
Band lengths:
284-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]