BtaINT0012977 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010182 | ACR
Description
acrosin [Source:HGNC Symbol;Acc:HGNC:126]
Coordinates
chr5:120223190-120223896:+
Coord C1 exon
chr5:120223190-120223396
Coord A exon
chr5:120223397-120223612
Coord C2 exon
chr5:120223613-120223896
Length
216 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
GCTTACCTCTGTGCCCACAGAAA
3' ss Score
9.18
Exon sequences
Seq C1 exon
TGGCCCCTGTGGGACACGGTTCCGGCAGAACCGTCAGGGGGGCATGCGGATCATCGGCGGGCAAGACGCTGCCCACGGGTCCTGGCCCTGGATGGTCAGCCTCCAGATCTTCACATACCACAACAACCGGCGGTACCACGTGTGTGGGGGCTCCCTGCTGAACGCCCACTGGCTGCTCACTGCCGCTCACTGCTTCAGGATCAAAAA
Seq A exon
GTATGTGCGGGAACTCGCAGCAGGGGTCTCAGAAAGGCTCTTCTTAGAACTGGGCATTCTCCAAGGGTCTCAGTGCCAAAGGTCCCTGAGGCTCTGGGCCTAGTGGCAACCAGATTGCGGGGTTGACCCGGACCTGCTGGGGATGGGGCCCTCCGAGGGTCATGGTCATCAGCCAGTCTGCAGCCAGTGTGACCTGGCTTACCTCTGTGCCCACAG
Seq C2 exon
AAAAGTGACCGACTGGAGGCTGATCTTTGGAGCTAAGGAAGTTGAGTGGGGGAGCAATAAGCCAGTGAAGCCGCCTCTGCAGGAGAGATATGTTGAGAAAATCATCATTCATGAGAAATACTCGGCGAGCTCAGAGGCCAACGACATTGCTCTCATAAAGATCACCCCTCCTGTTATCTGTGGGCACTTCATTGGACCAGGCTGCCTGCCTCAGTTTAGGGCAGGCCCACCCAGAGTTCCCCAGACATGCTGGGTGGCTGGCTGGGGATTCTTACGTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010182:ENSBTAT00000013434:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.3=74.3)
A:
NA
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGTCAGCCTCCAGATCT
R:
CCCACAGATAACAGGAGGGGT
Band lengths:
302-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]