MmuINT0010069 @ mm10
Intron Retention
Gene
ENSMUSG00000022622 | Acr
Description
acrosin prepropeptide [Source:MGI Symbol;Acc:MGI:87884]
Coordinates
chr15:89569337-89570029:+
Coord C1 exon
chr15:89569337-89569543
Coord A exon
chr15:89569544-89569745
Coord C2 exon
chr15:89569746-89570029
Length
202 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GCGCACCTTTGTCTCCTCAGAAA
3' ss Score
8.65
Exon sequences
Seq C1 exon
TGGTCCCTGTGGGTTACGATTCAGGCAGAACTCACAAGCAGGTACCCGGATTGTCAGTGGGCAGAGTGCGCAGCTTGGGGCCTGGCCCTGGATGGTCAGCTTACAGATCTTCACGTCCCATAACAGCCGCAGGTACCACGCCTGTGGAGGCAGCCTCCTGAACTCCCACTGGGTGCTCACAGCTGCCCACTGCTTCGATAACAAAAA
Seq A exon
GTAAGTGTGGGGCTCAGAGAGGGAGGTCTCTAGGGTACTCTGAATGGAAAGGGAAATTTCCCCCAGGGGGCTATGCCCAGGGTCTCTGTGGAGCTCTGGGGCCATGTGGTTACCAGACTCTGACCGAGCTCCGAGGTACACCACAGGCTTTCCTCTGGCCAGTCTGTGAATGAGTCCGACTGGCGCACCTTTGTCTCCTCAG
Seq C2 exon
AAAAGTCTATGACTGGAGACTGGTTTTCGGAGCACAAGAAATCGAATATGGAAGAAACAAGCCAGTGAAAGAGCCCCAGCAGGAGAGATATGTGCAGAAGATTGTCATCCATGAGAAATACAACGTAGTGACGGAGGGAAATGACATTGCGCTCTTGAAGATCACTCCTCCTGTTACATGTGGGAACTTCATTGGACCCTGCTGTCTACCTCATTTTAAGGCGGGTCCTCCCCAAATACCCCACACCTGCTACGTGACTGGGTGGGGATACATAAAAGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022622:ENSMUST00000023295:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.3=74.3)
A:
NA
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGGGTTACGATTCAGGC
R:
CATATCTCTCCTGCTGGGGCT
Band lengths:
294-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types