RnoINT0012284 @ rn6
Intron Retention
Gene
ENSRNOG00000029762 | Acr
Description
acrosin [Source:RGD Symbol;Acc:2024]
Coordinates
chr7:130543208-130543897:+
Coord C1 exon
chr7:130543208-130543414
Coord A exon
chr7:130543415-130543613
Coord C2 exon
chr7:130543614-130543897
Length
199 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
GGGCACCTTTGTCTCCACAGAAA
3' ss Score
9.06
Exon sequences
Seq C1 exon
TGGCCCCTGTGGGTTACGATTCAGGCAGAACCCACAAGCAGGTATCCGGATTGTCGGAGGGCAGACTTCGTCGCCTGGGGCCTGGCCCTGGATGGTCAGTTTACAGATCTTCACGTCCCATAACAGCCGTAGGTATCACGCCTGCGGAGGCAGCCTACTGAACTCCCACTGGGTGCTCACGGCTGCTCACTGCTTCGATAACAAAAA
Seq A exon
GTAGGTGTGGGGCTCAGAGAGGGAGGTCTCTAGGGTAACCTTCACGGACAGGGAAGTCCCCCAGAGTCTCTGTGGAGCTCTGGGACCACATGGTCACCAGACTCCAAAAGGGCTCTGAGGGTCACACCACAGGTTTTTTTTTCCCCCCCCTCTGGCCAGTCTGTGAACGAGACCGGCTGGGGCACCTTTGTCTCCACAG
Seq C2 exon
AAAAGTCTATGACTGGAGACTGGTTTTTGGAGCCCATGAAATTGAATACGGAAGAAACAAGCCAGTGAAAGAGCCCCAGCAGGAAAGATACGTGCAGAAAATTGTCATCCACGAGAAATACAACGCTGTGACCGAGGGGAACGACATTGCCCTCTTGAAAGTCACTCCTCCTGTTACATGTGGGGACTTCGTTGGGCCTGGCTGCCTACCTCATTTTAAGTCTGGTCCTCCCAGAATCCCCCACACCTGCTACGTGACTGGGTGGGGATACATAAAAGATAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029762:ENSRNOT00000045647:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.3=74.3)
A:
NA
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCCACAAGCAGGTATCCG
R:
GGGCTCTTTCACTGGCTTGTT
Band lengths:
256-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]