HsaINT0002790 @ hg19
Intron Retention
Gene
ENSG00000100312 | ACR
Description
acrosin [Source:HGNC Symbol;Acc:126]
Coordinates
chr22:51177699-51178405:+
Coord C1 exon
chr22:51177699-51177902
Coord A exon
chr22:51177903-51178121
Coord C2 exon
chr22:51178122-51178405
Length
219 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGT
5' ss Score
7.99
3' ss Seq
GCTTACCTTTGTGCCCACAGTAA
3' ss Score
7.79
Exon sequences
Seq C1 exon
TGGCCCCTGTGGGTTACGGTTCAGGCAAAACCCACAGGGTGGTGTCCGCATCGTCGGCGGGAAGGCTGCACAGCATGGGGCCTGGCCCTGGATGGTCAGCCTCCAGATCTTCACGTACAACAGCCACAGGTACCACACATGTGGAGGCAGCTTGCTGAATTCACGATGGGTGCTCACTGCTGCTCACTGCTTCGTCGGCAAAAA
Seq A exon
GTACGTGTAGGGATGCACTGAGGGAGGTCTTCAGAACGGCTCTTCTCAGAGAGGGGCGTTCCCCGGGGATGCTGTGCAGCGTCTCCCTGGGGCTCTGGGCCAAGTGGCTGCAAGACTCCGGGGGCTGGTCCAGACCTTTGCTAGGGGAAGGCCCTGAGGGTCGCTGTCACCAGGCTTTTGTCCAGCCGGTTGTGACCTGGCTTACCTTTGTGCCCACAG
Seq C2 exon
TAATGTGCATGACTGGAGACTGGTTTTCGGAGCAAAGGAAATTACATATGGGAACAATAAACCAGTAAAGGCGCCTCTGCAAGAGAGATATGTGGAGAAAATCATCATTCATGAAAAATACAACTCTGCGACAGAGGGAAATGACATTGCCCTCGTGGAGATCACCCCTCCCATTTCGTGTGGGCGCTTCATTGGGCCGGGCTGCCTGCCCCACTTTAAGGCAGGCCTCCCCAGAGGCTCCCAGAGCTGCTGGGTGGCCGGCTGGGGATATATAGAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100312-ACR:NM_001097:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.0=73.9)
A:
NA
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGTCAGCCTCCAGATCT
R:
ACGAAATGGGAGGGGTGATCT
Band lengths:
294-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)