BtaINT0012978 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010182 | ACR
Description
acrosin [Source:HGNC Symbol;Acc:HGNC:126]
Coordinates
chr5:120223613-120228373:+
Coord C1 exon
chr5:120223613-120223896
Coord A exon
chr5:120223897-120228227
Coord C2 exon
chr5:120228228-120228373
Length
4331 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ACTGAGTCACCTGGCTGTAGCCC
3' ss Score
1.32
Exon sequences
Seq C1 exon
AAAAGTGACCGACTGGAGGCTGATCTTTGGAGCTAAGGAAGTTGAGTGGGGGAGCAATAAGCCAGTGAAGCCGCCTCTGCAGGAGAGATATGTTGAGAAAATCATCATTCATGAGAAATACTCGGCGAGCTCAGAGGCCAACGACATTGCTCTCATAAAGATCACCCCTCCTGTTATCTGTGGGCACTTCATTGGACCAGGCTGCCTGCCTCAGTTTAGGGCAGGCCCACCCAGAGTTCCCCAGACATGCTGGGTGGCTGGCTGGGGATTCTTACGTGAGAATG
Seq A exon
GTGAGTACGGGCGGGGCAAACCCCGCTGACGTGGTCTTAGGTGAAGGGGAAATCTGTTGATGCCTGCCTGAGCCCCACCCAGTCCCTAGCCCTGTGCTGTGAGTGGATCCTGTCACCGTCCCCTTTCACAGCCAGAGAAACTGAGAGTGAAGCTCCGTGTCCAGGGCCCCTTGCCAGTGGCTGGTGTGGCCACCAGGGGTGGCTGGGCGGCACGCACAGAAGAGCGCCTCGGCATCTTTGGAATGGGGTCAAGGCTGGGCCTGGAGCTCCAGGGCTGCCTCTGGAGGTGGGGGTCGTGCCTTGAGGCAGGCAGCAGGTGGAGAAGGGCTCTGGATGGGATTTCCCTCTCCATGCCTCAGTTTCCCCATCTGTAAATGGAAGGGCCGGGTCACATGGTCTCCAAGCTCTGCAACTCCTGCGCGTGGCCCCTCCTGGCCATCTCTGCCCCCGACCCTCGGCCGTCAGTCCCACCCAGCTGTTACTGCGAGCGTCCTCTGTAGACGGCGAAAGGGGCTGCTGCTGGGCGTGACTTTGTGTGGGTCAGCAGCCTGGGCAGCATGTTTCTGCCAGTGGGGCAAGACCGAGTAGAACAGGCCTCTGTGCGTGAGCTGTGCTTTCAGCTTCCCGTAGGTGGGCACGTGAATTTTCACCAGTCATGTCACGGGTGTGAACGTATGATTGAAACTGAATTGGCGCTCAGTCTCCTTTCTTCACTGATGGAACATCTGTTCATTGGTGGAAAATCTGGGCCTCCTGGGGTTTAAACCTCAGTGTGTTTTGTGTCTTCTATCTTCTCCTCCCTCAAAGTTGATTTTGGCTTTTGGTAGGGCCGCTGTCTGTGCCGCCTTGCGGGGAGGGTGTCTCACAGTCTCTTCCCTGGCCTGGGGTGTCAGCCTCTATCTGGCTGCTGGTGTCCGAGGCTCTGCCGCGGCTCCCAGAGCAAGCGCACACTTTCTTCTTGCTCCACCCCCTTCCCTGCTCTGTCCACCTCTCCAACCTTGTCCTCAGCTTTCGGGGGTTCTTGCAGTCCCTGGGAGGCTGATCTCAGGGTTTCCATTCAACAACCCTCAACCCCACCTCTGCTCTCCTTTTGCTCAGGAGAATTGTAGGCTCCCGTCTATATCCTGGACGTCACACAAGGCCTCTTTGTTCTATAATCACCTTGAATTTAATGCAGTTTCTATCCCTTTTTGTTTGTTTGTTTTTGCAAACCCATCCCTTAAAAAGTGAAAGTGTTTAGTCGCTCAGTTGTGTCTGACTCTTTGGGACCCCCCTGGATTGTAACTCGCCAGGCTCCTCTGTCCCTGGAATTCTCCAGGCAAGAATACTGGAGTGAGTAGTCATTCCCTTCTCCAGGGGGTCTTCCCAACCCAGCGATTGAACCTGGGTCTTCCAGGGCCAAGTCTTAAAGAAACCCCCAGGCTCCTGTGATACTCCTTCTGACCTTTCCTTATCTGGACCTACCACTTCCTTGAACTCAGATGCTTTGGGGCTGGAAGAGTACTTTTGGGAATTGGTCTCTTTTTCCATCAGACTTTTAGTTTCTGCAGGCTTTTTGGCATTTGATATTTAAAACCAAGGTGCTGAGATTGAGAAAGCTCTTTTGTGTCTCAGGACACCCGTCTCTTAACAAGGAATTGCATGGCTTCCAAGGCTGTAGGCTCTGCCATAGATTTAAAGGGTCACTTTAATGACCAACAAGCCAGGCTTGTGCTTGTTAGTTCCATGTCACCTGTACCTAAAGGGCAGTGAATGTGTGAAACCCTCCATGCTGCTTAGGTGGGAAGGAAAAGTGGGGGCTAAGGAAGTTGGGAACATAACCGAAGCCTTGCAGACACGCGTTCAGCAGCCATCCACCGAATGCTTGCTGGTGCCCTCCCCAGCCACGGTGCTCCATGGGCTTCCCTGCTGGCCTTACACTCCGAGTCTGCCCCTTCCCACCTGTACCGCACATGGTGTTCAAACCCTCTGGGCGGTGACTGGCTGTGGGTGCTGCTATGGCAGGGCTGTTGGGATTCTCCTGCCTGTGGGACCACGTGATTCAGAGGGTACAGTCGCCTTGGCTCTTGGGCTCCAGTTCAGTTCAGTTCAGTGGCTCAGCTGTGTCTGACTCTTTGTGACCCCATGGACTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGCTTGCTCAGACTCACGTGCATCGAGTCGGTGATGCCATCCAACCATCTCATCCTTTGTTGTCCCCTTCTCCTCCTGCCTTCAGCCTTTCCCAGCATCAGGGTCTTTTCCAACGCGTCAGTTCTTCTCATCATGTGGCCAAAGTATTGGAGTTTCAGCTTCAGCATCAGTCTTTCCAATGAATATTCAGGACTGATTTTCTTTAGGATGGACTGGTTTGATCTTGCAGTCCAAGGGACTCTCAAGAGTCTTTCCCAACACCACAGTTCAAAAGCATCAATTCTTTAGCATTCAGCTTTCCTTATGGTCTACCTCTCACGTCCATACATGACCACTGGAAAAACCATAGCTTTGACTAGATGGACCTTTGTTGGCCAAGCAATGTCTCTGCTTTTTAATGTTCTGTCTAGATTTGTCATAGTTTTTCTTCCAAGGAGCAATTGTCTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCAAGAAAATAGTCTGTCACTGTTTCCATTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTCTGTTTTTGAATCTTGAATTTCAAGCCAACTTTTTCACTCCCATCAAGAGGCTCTTTAGTTCTTCTACACTTTCTGCCATAAGGGTGTTGTCATCTGCATATCTGAGGTTACTGATATGTCTCCTGGAAATCTTAATTCCAGCTTGTGCTTCATCCAGCCTGGCATTTCACATGATGTACTCTGTATATAAGTTAAATAAGCAGGGCGACAATATATAGGCTTAACATACTCCTTTCCCAATTTGGAACCAGTCTGTTGTTCCACGTCCAGTTCTAACTGTTGCTTCTTGACCTGCATATCTTGACCTTGATTTCTCAGGAAGCAAATCAGGTGGTCTGGTCTCTTGAAGATTTTTCCATAGTTTGTTGTGATCCACAAAGTCAACAGCTTTGGCATAGTCAATAAAACAGATGTTTTTCTGGAATTCTCTCGCTTCTTGTATGATCCAACGGATGTTGGCAATTTGATTTCTGGTTCCTCTGCCTTTTCTAAATCCGGCTTGAACATCTGAAAGTTCATGGTTCATGTACTGTTGAAGCCTGGCTTGGAGAATTTTGAGCATTACTTTGCTAGCATGTGAGACGAATGCAATTGTGCGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTGGGATTGGAATGAGAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCCAATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCACCATCTTCCAGTACCTGGCCTTTGGTTTGGGCTCCAGGCAGGATGCAATGTTGGCTGCTCCAGCCACAGTGCAGGCTGGGGTTTTCCTAACCCCTGGTCATGGCCAAGCATCTGAGGCTATAAAGGAAGTTCTGACCTGGCCTCAATGGTCATTTCAACCGCCTGTGCCCCTGACAGGTCTGCTGTGTGTGGAGGCACCACCGTAGGTCTGTTGGCTCCAGATCTGAATAAAGATTTGAGGCACATGGGAGGGAGTCATCAGCCCAAGTCCTGCGGGTCCTGTCCATGGCTGGATGGAGGCTAGAATGCAGGGGATGACCTACAGCCAGAGTGAACGGTGTGTCCTGGACTTGAGTCTAGAGACGAAAATCCTTGGTGTGAGTCCAGGGTTCCCTACTGTGACCTTGGGAAGTGGCATTCCAATCTCCTGATTGGAGAAAAGGGGAATAACTGTTTCTAACTCATGAAGTGCCTATGAGGAGTGAATGAGATGAAGCCTGTGTGACTCAAAGTAAGTGCTCAGCATGTCCTTGTTATAATTGTTAATGTCATAGCAAACTTCCATAAGCCAGCATCCACCCTTCACGTATATGACTCTTCAGCTGCCTCCGCCGCCCTCCTTCTGTCGTCTGTCCACAGTCCCCCTCCTTCCTTCTCCTCCAGTTCCATCTCCCAAGTCTCGTGTGCTCTTCCAGCTGTGCTTTCTTCCCTTCAGGAGTGGATAAGGAGAGGCCGGGGGCATAGGCTTGCTTGGCTCTTAGGTTCAAGTGGAGCATTTGAGGCCATTGGGGGCTCAGTGGCGGGAGGAAGGCAGGGCTTTCCCAGACGTCTTCTATGCTTACTGACCACTGAGTCACCTGGCTGTAG
Seq C2 exon
CCCGCAGGACATCACCTGTGCTGCAGGAGGCGCATGTGGACCTTATCGACCTCGACTTGTGTAACTCGACCAGATGGTACAATGGGCGCATTCGTTCAACCAATGTGTGCGCAGGGTACCCTGAAGGCAAGATTGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010182:ENSBTAT00000013434:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]