HsaINT0002791 @ hg19
Intron Retention
Gene
ENSG00000100312 | ACR
Description
acrosin [Source:HGNC Symbol;Acc:126]
Coordinates
chr22:51178122-51182634:+
Coord C1 exon
chr22:51178122-51178405
Coord A exon
chr22:51178406-51182488
Coord C2 exon
chr22:51182489-51182634
Length
4083 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACCGAGTGGTCTGACTATAGCCC
3' ss Score
1.73
Exon sequences
Seq C1 exon
TAATGTGCATGACTGGAGACTGGTTTTCGGAGCAAAGGAAATTACATATGGGAACAATAAACCAGTAAAGGCGCCTCTGCAAGAGAGATATGTGGAGAAAATCATCATTCATGAAAAATACAACTCTGCGACAGAGGGAAATGACATTGCCCTCGTGGAGATCACCCCTCCCATTTCGTGTGGGCGCTTCATTGGGCCGGGCTGCCTGCCCCACTTTAAGGCAGGCCTCCCCAGAGGCTCCCAGAGCTGCTGGGTGGCCGGCTGGGGATATATAGAAGAGAAAG
Seq A exon
GTGAGTATGGGAGCGCCTCCAAGGGGGGACGCTGCTGGCCATTCTCCTGGTGGTCTTTGAGGTGCAGCGGTCACTTGTTGACACCCAGCCAGGCTGCTTTCATCCTCCTCACGGCGCTACACGTAGAGCCATCACTGTGGCCTTCCACAGTCCCCTGTGCCAGGTCACGTGATGGGTGACTCGTCTGGCTGTCTACGGGGGGGCTGACAGCAGGTGCAGGCAGAGCGCAGCGTTGCTTAGAATGGGGTTGAGGCTGTGTCTGTATTTGGCACCTGGGGCCCAAGCTGCTGGATCCTGGAAACAAGCAGCAACCCTGAAACAGCCTTTGGAGAAGAGCTCCAGATAAGGTTATGTGGCCGTATGACAGTGCCTTCCACTCTCTGGGCCTTGGTTTCCTCATCTGTAAATGGAGGGGCTGGATCAGATGGTCTCCAAGCTGACCATTTCCTAACACCTGTGATTCCAGGGCCCAGCCTTCCTGCTTCCAGGCTGTCTTTGTCACCATCAGCAGCCACCTCCGGTGCAGTCATAGCACCAAATCTACCCTCTCCATCTGAGTTACTTGACATTTGCTCTGTAGACTGGGAAGGGGACCGGTGGTTGGTGTGGCTTTCTGTGGGTCATAGGCATCCCTGTATTTCAGGCTTCCTGGAGTGTCCGGCAGGTACCTCTCCATTCAAGACGGGTGTAGCTGTCGCTCTAGAGCTCTGTCCATAACCAAGCTGTCTCTCTCTCCCCTGGCTCCCAGAAGATCTCTTGCCCATCCAACACTACCTGATACACTCGACACCAGATGAGTTCTAGAAGAGTAGGGGGAATTTCTTCCGTACCAGACCAGGCTCACGGAGGGCCCCAGGTGTGACCTAGAACAAATTGTCATTACTGACTCCGTGGTCAGAGACGCCCAGACACCTCTCCCTACATACTTAGGCACACTAGAGATACCATTTATCCCAGAAGCAACAGGTGACCCCATTAAATGGCAGCAGTGAGCAGCAAGGTTTTGCCAGCAGGACAAGACCCAGTAGGACTTGATCTCTGCATGTGACCTATACTTCCAGCTTTCCATAAGTGGTGCATCTCAATCTCTTTTTTTCTTGATAATGGATAATGAGGCTTCTTAATTCAAGGCAATTCAGTCATATGAGTCTAAAACGCAGCCTTTTTTGGGTAACAACAACAAAAAGTCAATAATTTGAGGATTCTTCCTTTAACTCTTATTTCCTTCTCTGAGGGCGTGGTCTAAGTTTCTGACAGGTTTGTCACCTCTCCTGTCCCTCAGGGAAGGGAGTCTCATCCCAGCTGTCCTTGTTCTCACTGGCCTCACTTGACACGTGGCCATCCCCTTCTGGCCTGGAGTGACAGCCTCTATTCCAGCTGCCGATACCCATGGCTCTGCCCTGGCCTCTGTCCAGCCCCCTAGCCTGCCATGCTCTGTCCCCTGTCTGATGATGTCCACAGCTCTTGGGGGTCCCTATGTTCCTGGGAGGCTGATCTTAGGGTCCCCACTGCCAACCGTTGCTGTCCTATTCTATTACTCAGACAGATTGTAGTGTCCTAGCTATATCTTGGATGCCATGCAAAACCTTTTTTGTTCTGGAATTCCCATAAACCTAATAGGATCACTCTGTTTCTGTTTGGGGTTTTTTTGTTTTTCATTTTTGCAAACACATCCTGTACCCATAAGCCCAAGTCTTAAAGAAACCCCCAGGCTCCAACTCCTGTGATCCCTTCAAACCTTCCATGTCTTACCACCTCCTTCAACTCATCTGCTTTGGGGCTGGAAGGGTATTGCTTGGGTATTGCTTCTTTCCCATTGGGTTTTGAGTCCCTGCAGACTTTTAAGCATTTGTTATTTAAAGCCCAGGTGTCGGCTGGGTGCAGTTGCTCATTCCTGTAATTTACCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCAATCTCTACTAAAAATATAAAACATTAGCAGGGTGTGGTGGTGGATGCCTGTTGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGTGAAGGTTGCAGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGTAACAAGAGCGAAACTTCATCTCAAAAAAAACCCGCCAAGGTGTTGGGATTTAGAAAACCCTTTTCTGTTTGAGGACACCTGGCTCTTCACAATAAAACCCATGGCTTTCAAGACTATGGGCTCTGCCCTAGACTTAAAAAGTCATCTTGGCCGGGCGCGGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCAAGGAGGGTGGATCACAAGGTCGTGAGATCGAGACCATCCTGGCTAACACGGTGAAACCTCATTTCTACTAAAAATACAGAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCGCCACCGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAATCGTCTTAATGGCTAATAAGCCAGGATTGTTGTCATTGTTGTTTCAATGTCACCCCTACCCCAAGGGCAGTGCATGTACAAAACTCTCACTGCTGCTTGGATGGTAAGAAAAGGTGGGGGCTAAGGGGATTAAAAAACGGAAAGCCAGCGAGCACTCGTTCAGCAGCCGCTTACCAGACGCCTGCTGTGTGCCGAGCCCTATGCACGTCACTCGTGTGTCCCCTGTCTCCCGTCCTGGCCTGTGCAGCTATGTTCTGGGTCTGCCCCTACCTCAGTCTGCTCCCATCTGCTCTGCAGGTGACGTCCAGATCCACCCCCAGGGTTGTAGGTGCTGCTGCGGTGGGGGCCAGAGTGGCTGCTGCTGTTGGGGACCCTTCTGTCTGTGGGACCCCTTGAAAAGGAGCAACGCTGGCGCATGCGCCGTAGCATCGGGTCTTTCTAACCCAAAGGTCACGGTAGAGAGTCCAGCGCTTTCTTTCTTTTTTTGTTTGAGACGGAGTCTCGCTCTGTGGCCCGGGCTGGAGTGCAGTGGCGCCATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGAACTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAGGCGTGAGCCACCGCGCCCAGCCAAGTCCAGGGCTTTCAAGGAAGTCCGCATCGGGGTTGTTTCAACCGCCCCTGCCCCTGCCAGGTCTGCCCGTGTGTGGAGGCGCTGCCCCGAGCTTCCCCTGCGGTCTCCTCGGAACAGATATGCAGCATATGGGGAGGGACTTATTGACCCAGCTGCAGCAGATCCCGTCCGCAGCTGAGCCGAGGAGTTCTGAAGAGGGACAAGAAGCAGGGGGAGTGGCTTACAGCCAGACTGTGGGAGTGGACAGTGTGTCTCAGACTGGAGTCTGGAGAGGAGCAGTCCTGAGGCCAGGCTGCAGCCCCACCACCTCTCTACTGTGACCTGGGTGGGCGGTGCTCCAGCCTTCTGATCCAAAATGGGAATAACGGGACCATGTGACTCAGGGAGTGCTTGGTGCACACTAGGTGTTATTGGTAATACTGCAACTAACCTCCATAATCCATCGTTAATACGCACACCCACCCCCCATCCACCTGTCCACGGGCCTCCACCCTTCCTTCCTCTCTTCCTCTCTCCTCTGGCCTTGATTTGGATAACATTTCCCCACCTCCTCCCACCACCTCTAGTCTGCTCTTTCTGGTGTATAAGGAGGGGTCGGGGCATCGACTGGATGGGTCTGAGGTTTAACTGGAGCATCACAGAGGATGGGGTTCGGTGGGGCAAGGAGGCAGGGCTTTTGTCCGTGTCTCCCGTGATCACTGACCACCGAGTGGTCTGACTATAG
Seq C2 exon
CCCCCAGGCCATCATCTATACTGATGGAGGCACGTGTGGATCTCATCGACCTGGACTTGTGTAACTCGACCCAGTGGTACAATGGGCGCGTTCAGCCAACCAATGTGTGCGCGGGGTATCCTGTAGGCAAGATCGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100312-ACR:NM_001097:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)