MmuINT0010070 @ mm9
Intron Retention
Gene
ENSMUSG00000022622 | Acr
Description
acrosin prepropeptide [Source:MGI Symbol;Acc:MGI:87884]
Coordinates
chr15:89400177-89403695:+
Coord C1 exon
chr15:89400177-89400460
Coord A exon
chr15:89400461-89403549
Coord C2 exon
chr15:89403550-89403695
Length
3089 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ACTGTGTGGCCTGGCTGCAGCCC
3' ss Score
5.76
Exon sequences
Seq C1 exon
AAAAGTCTATGACTGGAGACTGGTTTTCGGAGCACAAGAAATCGAATATGGAAGAAACAAGCCAGTGAAAGAGCCCCAGCAGGAGAGATATGTGCAGAAGATTGTCATCCATGAGAAATACAACGTAGTGACGGAGGGAAATGACATTGCGCTCTTGAAGATCACTCCTCCTGTTACATGTGGGAACTTCATTGGACCCTGCTGTCTACCTCATTTTAAGGCGGGTCCTCCCCAAATACCCCACACCTGCTACGTGACTGGGTGGGGATACATAAAAGAGAAGG
Seq A exon
GTGAGTATGTGTCGGGGCTCCTCTGTGGGCCCTGGTGCCGGTTCTCCTTGCTGGCTGTCTTTTTGTGGCAGGGGTCATGGCGTGTGGGCTGAGCTGTTTCAGTTCTCACGGCATCATGAGTAGAGAGGCTGGCACTATTCACGACTGGAGAGTTCAGTGTGAGAGGAGCTGAGTCCCATGTCTAAGGTCATGGTGTCCAGTTTGTCGGAGGGCATGGCCCGCAGTAGCCTGGCTACCTATGGGAAGGTTGAACGGCGGCAGGAAGAAGTCAAACCTTGACGTGGTTTAGAATGTAGCAGAATCGTGCGTGTATCTATCAGCTGGAGGCTTAAACTGAAGCAGTGTTTGCAAAAGACCCCTGGATCTGGCTTCCTTGCGACGAGAAACACAAGGTGTTTCCCTCAAGTGTTCTGAAAGCAAGCAAAGGGCTGGTCTTACAAAGTTGAAGCATCTCTGACTTCTGAGGTCTCGGGGATGTCTTAATTCACTATCAGCAGTGGGTACCTAGGTGGTTTCCCTTCCGTGGATAGTCATAGGGCCAACACCTTTCCTACCAAATGACTTGATGTTCTTTACATAGACTGGGAGGGATGTAGTTGGTGAGCATACTTCTCTTTGGGCCGTTAGTTCAAGACTCCTGGAATGGTCCAGCAGATCTCTTGGCATTCAAGATGTGTAAAGCCACCTTTCTAGCTCTGTCTTTATTCATGTACCATTGCCCCCTGGCCCACAGAGCACCAGGGGAGGAGGAGTGTTTTCTGTAGCAGACAGGGATACAGGAAGTGTTCTAGAGCCACTGATGGCTCCACAGTTAGATCCGGAGTCCCAGACAACCTCCCCACATCCTTAAAGTCTAGGGCCACTGTCAACACCAGAAGTAACAGGTCACCCTCTTGAGTCCCAACAGTAGGCAGCAGGGCATCCGTGGAACAAGACCAAATGGAACTTTTCCCCTGCTCACAAACAGTGCTTTCGGCTTCATGAGTACACATTTTTATTGCTACATTAGGGATGTGAAATGTGACTGACATTAGTGGAGACATCAGTCCCTTCTTAGATTTTTGGAAAATGTAGGCGTGCCAATTTGAGACAGTTTGGTCGTTTGGGGCTTGCAAGGCAGCCTTGTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAAAATCCCTGATCTTCTCACTCTCTTTTTCTTGAGGTGATCTAAGTCTTTAAAGCAGTGGCACTTAAATTGTGGTTTGAGGCCCCTTTGGCAAACGGATTTACATTACGATTCATGACAAGTAGCAAAATTACGGTTATGAAGTAGCAAGGAAAATAATTTTATGGTTGGGGGGGTCGCCACAGCAGGAGGAACTGTATTAAAGGGACGCACAGCGTTAGGAAGGCTGAGAACCACTATTTTTATAGGTTTACGACCTGACCTACCCTTCAGGGGAAGGGGTCTCACCCTCGCCCACCTCAGTTTTCGGTTGTTCTTGCTGGCTTGTGGCGGCAGCCATCTGATGGGGGTGGGCATCCCATCTGCCGGTGCTCCTGGCTCTTACCTGAGCATGCACACATGCATGCGTCAGCTCTGTCTATCTGCCCTCTGATCATATACATAGCCTGTGTTCTTGTAGACCTTGGGTAGCTGGTCTCTGGTTCTATAATCCTCTTAAATCAGTGGGGGTATCGCTTTTTGTCCTGCTGCCTATATAAAGACCTCAGTCTTTAAAAAAAAATTCCCTAAGCCCCAAACTCTCATGGCTTGTTTATATATGCTTGGTTTTTGCCCCCTTTTTGAGTTTGTCTGCTTTGTGGTTGGAAGCACTATCCGGATACTGCTCCTTTAGTTGGGACTTTGAGTTCTTAGAGGCCTCCTATTGAAACAGTGTGGTATCGAGAACATTCTGCCTCAGGACCCCCGGCTTTACATAGTGAGGTTTGTGACTTTCAAGACTATGGCCTTAGCCACAGACCTAAAAATGTTACCGATCTTAATGGCCAGCAAATTTGGGTTGCTGTTATTATTTAAGTGTCATTCCCACCTCAGGAACAGTACTTGTACAAACCTCTCACTAATGCTGGGATGTGAGAGGAGGGGACAGCTCTATTGAAAACAGAAAACGAAATAAAACATCCCGTTTGAAAAAAAAAAATCCTTTAAATACCCAAAGCTCAGGAAACATGCATTTAGCAGGCACCTCCTGCCTGCCTGCTGAATGCTTATCTCTGCATATACTGGCCCCAAGCTTTTCCTGTCTTATCCCCTCCACTGCCCATGGCATTCAAACCTACAGTGCCACGGGAGGGGGCTGTTCCAGCTGCGGCATGTGAAACAAGATGAGGCATAGCCATGCCTTAAGTCAGGTGCACACTGCCTGCCTGAGCTGAAGTATAACCCATGTCTTTCCTAACCCGCACGATAGTGTCTGTGGTACGAGAGAGGCCTCACTCGACTCAGCTGTCCTTTTCCAAAACTCTCCTCAAAGCAGCTCTGAGACACATGGGAGGATCCTGTCTGAAGCTGGGTGGAGGAGTCGTAATGGAGGATTAAAACAAAACAACAAAACAAAACAAAACAAAACAAAACGGGGAGGGTGACTTCTAGACACACAGTGGAGAATGAAAGGTGTGTCCCAGTCATGGGTGTGGAGAGGGGCAAAGCCTGGCCAATTTCTCGAAGTAGGTGGGCGGTGCTCCAGTCCCTGATCCAAAAACAGGAGGAAAACGACAGTGGACTTAGCACTCGGCACATACTAGTTGTGCTTGTTAGTGCTGCAGCTAGCCTACACAATCCCTCCTCCATCCTTAAGATAGACACCATCTCTTAAGATATCTTAAGATAGACGCCATCTCTTCCTCCAGGCAAAATTCTTTCTACCTCTCCTCCCACCTGTCCTTTCACTGTGCCTTTCTTCCCCCTCAGGAGTGTGAGGGGAGCCTGAGGGGAGCTTTGTTAACCAGAGCGCTGCATAGGATGGATGGAAGCTCACGGTGGTAGGGGAGGAGGCAGGGCTTTCTCCGGCTCCTCCCTGCGCACTGACTGACAACTGTGTGGCCTGGCTGCAG
Seq C2 exon
CCCCCAGGCCATCACCTGTCCTGATGGAAGCACGTGTGGACCTCATTGACCTCGACCTGTGTAACTCAACCCAGTGGTACAATGGGCGTGTCACATCGACTAATGTGTGTGCAGGGTATCCTGAAGGCAAGATTGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022622-Acr:NM_013455:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: