BtaINT0013094 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018986 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:62506791-62507156:-
Coord C1 exon
chrX:62507047-62507156
Coord A exon
chrX:62506930-62507046
Coord C2 exon
chrX:62506791-62506929
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATTTTCCTTCTGTTCAACAGACT
3' ss Score
8.39
Exon sequences
Seq C1 exon
TTGTGACTTTATATGCCACCCTTGGCAGAGAAGCTGTAGTTCATGGGTTAAATGAATCTGAGGCTACATATCTGATTACTAGTGTTGAACTTCTGGAGAGTAAACTTAAG
Seq A exon
GTAAATATGACATTTTCTTTTAATTTATGGTAGCATTTGACAGCATAGGAAAATATTCAGTAATGAAGTTGATTGCAAGCCCATATTTAATAGCTGGATTTTCCTTCTGTTCAACAG
Seq C2 exon
ACTGCATTGATAGATATCAACTGTGTTAAACATATCATTTATGTGGACAATAAGACTATCAATAAAGCAGAATACCCTGAAGGATTTGAGATTCACAGCATGCAATCAGTAGAAGAGTTGGGATCCAAGCCAGAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018986:ENSBTAT00000054636:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTTTATATGCCACCCTTG
R:
TCTGGCTTGGATCCCAACTCT
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]