HsaINT0002916 @ hg38
Intron Retention
Gene
ENSG00000068366 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:109680998-109681375:-
Coord C1 exon
chrX:109681266-109681375
Coord A exon
chrX:109681137-109681265
Coord C2 exon
chrX:109680998-109681136
Length
129 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTTTTCTTTCTGCTCAACAGACT
3' ss Score
9.37
Exon sequences
Seq C1 exon
TTGTGACTTTATATGCCACACTTGGCAAAGAAGCAGTAGTTCATGGGCTAAATGAATCTGAGGCTTCCTATCTGATTACCAGTGTTGAACTTCTGGAAAGTAAACTTAAG
Seq A exon
GTAAATATGAAATTTTCTTTTAATTCATGGTTGCGTTGTCTGGCAGGACAGAAAAATATTCATTCAGTAAGTGAATTTTTGTTGCAGGCTTAAGTTTAATAGCTGTTTTTTTTTCTTTCTGCTCAACAG
Seq C2 exon
ACTGCATTGTTAGATATCAGTTGTGTTAAACATATCATTTATGTGGACAATAAGGCTATCAATAAAGCAGAGTACCCTGAAGGATTTGAGATTCACAGCATGCAATCAGTAGAAGAGTTGGGATCTAACCCAGAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000068366:ENST00000348502:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTTTATATGCCACACTTG
R:
GATCCCAACTCTTCTACTGATTGCA
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development