RnoINT0012387 @ rn6
Intron Retention
Gene
ENSRNOG00000019180 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:RGD Symbol;Acc:69401]
Coordinates
chrX:113620565-113623954:-
Coord C1 exon
chrX:113623845-113623954
Coord A exon
chrX:113620704-113623844
Coord C2 exon
chrX:113620565-113620703
Length
3141 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CTTTGATTTCTGTTCACCAGGCG
3' ss Score
8.17
Exon sequences
Seq C1 exon
TTGTGACTTTATATGCTACCCTTGGCAAAGAAGCTGTCGTTCATGGATTAAATGAGTCTGAGGCTTCCTATCTGATTACTAGTGTTGAACTTCTGGAAAGCAAACTGAAG
Seq A exon
GTAAATACGAAACTTTTTATTTTAAGTGTATGTTTAATTTTCAACCAATTTGTAAAAATATATGTGGCACCATGTGATATTTCAATGTCTGTTTATTGTTCAAATCAGCTTAAAACGTGTTTCCACAAAGTTTTATTTCATTACGAAAACATTGAGTATACTCAATTTTATCCAAGAAATAAGTATATGGTCTATTATCAATATAGCCCTCCTCCCGTGTAGTAACTCCATATCTTCTTGCGCCATATGCAGCTGTAGCTTAGAATCCATGAGTCAGCTCCCGTCTTCCCATTCCTCCTGCTTTACGTAGTCTCTGGTAGCTACAGTTCTACCTTTAACTTCAGTTTGATCAGGTTTTCTTACGTTTCACATGAATGAGAGTGTGTGCTACTTTCCGTGCCTGGCTTATTTCACTTACAGAAATGACTGTTAGTTGCAGCCAAACTGCTGCAAATGGTAAGCGCTCCTTCTTTTTATGGTCGAATAGTATTTCAGTGTATTATTTGTAGCACATCTTCTCTATCAGCTCGTAGCCTGTATCCATTCCTTGGCTATTGTGAATAGTATAGTATTGACTATAAATGTCATTGATATGACTTCATCTCTTGGGATTTCCAATATTAAGATTGTTATGGTCATATAGTAATTCTGTTTTTAAGTTTTGGGGGCTCTTCTGTGCTGTTTTTGTATGACTACATTGATAGAAATTTTCAAACACTGTGGTGCAAGGGTTCCCCATAGACTTACTGCCTTTTGCCAGTTAGATGATAGTCATGTTCTTGGGAATTAGACTTACACTTCCCTGATGATTAGCAATGCTGAGAATTTTTTTCATTTATCTGTTGCTTATTTATTTCTGTCTCCTTTTGAGAAATGTTGATGTAGATCTATGGCCCATTTTCGTTCGGGATCTTTTGACTTTCTTGCAGAGTCTCTGGATATGGATCGTGTCACATGTAGGCTTTGCAGGATTTTTACCCTGTCCCATAGGGCCTTCCTTCCTGTTCTGATGATTGTAACCTTTACTGTTCAGAAACTTTTTAGTTCCCCACAATGCCACGTGTCTGCCTTTGCTCTGTTTTTTATGCTTTTGGAGTTTATCCAAGAACAAAACAAAACAAAACAATTGAGAAAACCTGTTCCACTTCAATGCTCTGGAACATTTTCCCAGGCTGGGCCATCTCCCCAGGCCCTGTTTATCTTCTGAAGAACCAGTTCTGGGTCTCCTTCATCTTTTGTATTGATGTCTGTTTCATTTAGCCATGATCTTTGTTATTTCTTTTCTTCTGCTTTAGTTTTCTTTCTGCTTTTAGTTTGGTTTTTTGATACAATGATGGTTTATTGAAGTCTGCCTTTTAAAATGTACACTTTGAGTGCTATAAACATCACCTTTGATACTACTTTGGTTGTATCCTGTATGGTTTAATATCTTGTGACTCCACTTTCATTTGTTTCAAGTTTCTTTTTTGGTTTCGTCCTTTATCCATTGTTGGGTTGTTTAACTTTCATATGTTTGTGTAATTTATTACAGTAATTTTCTAGTTTTATTGTACTGTGGTCAGAATAGCTATTGGCATGACTAAGTTTATTGGAACTTGTTCATGTCCTAGTCACTTGTCTGTCGTGTAGTACGTTCCATATATTGGTAAGATGTGAGAAGCAGGTTGGTAGTGTCTGGGGGAGATACAGGGAGGAAAAGTGCAAAACCACATTCTGTTCAAAAATGTCATCATAGCATAAAATATTCATACACTGATTTAAAATAATTTAAGTAGAAAACTGGTAGCTGTTTAGAGTTTTGTAGCTACCTATTAAGTCTCTTGTTTTGGGGTACAATTTAAATTTTGGATTTTGTTGTTGCTGTTGCTGACCGACTTCATGTATGGGTCATGTGCCCATTGTTCAAAGTGGGCTTTTTCAGCTGTCTATAGTGAAATCTATCACTGTATTTATGAATGCTTGTTTGATAAAGTATCTGGGTGCTCTGATATTTGTTGCATATATATTTAGATATTTTTCTTTTTGTACAGCTTATCCCTTTAGTTTGTTTGTTGGTTTATTGGGGTGGGACAGACACGCCCACATGCCACCATGTAAATATAGAACTCAGAGAACAATTCGAGGGAGTTGGTTCTTCCCTCCATGTAGGATCTGGAGGGTTGTGGATCTCAGGTCACCAGGCTTGGAGGGAAGCACCATTACCCACAGAGTCATTTTGCTGACCCCAGTCATTTTACCATCATTATGCATGGCCTTCTTGATTTTTTTTTAACTGCTTTTGATTTAAAGTCGATTTTACCCGATACTTGGTATAGGTGTGCCTTTAGAAATGTAGTAAGTTGATTGTATGCACCATATAGTTAGGCAGTCTTAATCCGTTCAGCAACTCTATGAACATTTTGATCTGTGTACATTCCAGTTACCGATTGGAGTGTAGGGCCTCACTGCGACCAATTTTGTTGCTTGCTTTCTTGTTTGTTGAGGTCTTATCTACCCCGCTTATTGTCTCATGTTCGATTAAGTGGTTTATTCTAATGGGGGATTTTGATCCCTTGCTTTTTATTTTTGTTCGCCTATCATTGGTTTTTGCTTTGTGGTTACCAAGAGGCTTCAAAAAGTACATGTTCGTGAGAAGCAACATGAAGATATTAAGAGACAGGCGTATGATTAGAAGGATAAGAAACAGAAATAGAAAATACACTAGTAGGAAAACCAAACTTGCACTCCTTCCCTCTTCCATTTAAAGTATTTGTCAGGTTGGGGAGCTGCGATGGGGAGTGGGTGGGTGGGTGAGCACCCTCATAGAAGCAGAGGGTGTGGGATAGCAGGTTTCTGGACAGGAAATGTTATTAAAAAATGTTATTAAAACTATTTGTTATGTAAGTCTTTATATCGCCTGCCTCTTAGCATCTTATTGCAATTGTTATTATCTTTAATTGTTTTGGTTTTAGTAGTTTTTATCTGAAAGATACGGATGTTTTAGTTAATTTTTATGTTTACATTACTAGAGCACCATGCATTTTTCTATAATTACCATTGACCGTGAAATTTACTTAGTGAACATTTTTCCAGTCCTTTCAGTTAATAACAGTTTCTATAGTGTGACAAATTGAATGGCTGACTTTGATTTCTGTTCACCAG
Seq C2 exon
GCGGCATTATTAGATATCAATTGTGTTAAACATATCATTTATGTGGATAACAAGACTATCAATAGAGCGGAGTACCCCGAGGGGCTTGAGATTCACAGCATGCAGTCAGTAGAGGAGCTGGGATCCAAGCCAGAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019180:ENSRNOT00000026057:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.234
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]