BtaINT0013341 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022244 | ACTN3
Description
actinin, alpha 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:165]
Coordinates
chr29:45240650-45241237:+
Coord C1 exon
chr29:45240650-45240829
Coord A exon
chr29:45240830-45241090
Coord C2 exon
chr29:45241091-45241237
Length
261 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
CCTGTCTCCTGCTTTCATAGCAC
3' ss Score
8.35
Exon sequences
Seq C1 exon
GAAGTGGGGCGCCTAGCCGCGGGGATGGCCGGCTCTCTGGAGGAGCAGATGGCGGGCCTGCGGCAGCAGGAGCAGAATATCATCAACTACAAGAGCAACATCGACCGGCTGGAGGGAGACCACCAGCTGCTGCAGGAGAGTCTGGTGTTTGACAACAAGCACACGGTCTACAGCATGGAG
Seq A exon
GTGGGGCCACGCCGCTTAGGACCGAGGGGAAGGCGGTGCTGTGGGCAAGCCTGGGGCGGCCATGGCTGGTTGATCAATACGTAATAAATCATCAAACTTTATGGCAGGAAGGGCCGCTGGATGTCACTCAGTGGACCCTCCCGATCGGGTCCAGCAAGGGGGAGGACTTGCCCGGGGTCAGACGGTGAATTGGGGGTGGAGCCAGAGCTCGTGGCCAGGCACTGGCCGCCCACTGACCCGGCCTGTCTCCTGCTTTCATAG
Seq C2 exon
CACATCCGCGTGGGCTGGGAGCAGCTGCTCACCTCCATCGCACGCACCATCAACGAGGTGGAGAACCAGGTACTGACCCGAGACGCCAAGGGCCTGAGTCAGGAGCAGCTCAACGAGTTCCGGGCATCTTTCAACCACTTTGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022244:ENSBTAT00000030030:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(56.7=100)
A:
NA
C2:
PF0043516=Spectrin=PD(20.2=42.9),PF134991=EF-hand_7=PU(34.2=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTCTGGAGGAGCAGATG
R:
CAAAGTGGTTGAAAGATGCCCG
Band lengths:
292-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]