RnoINT0012634 @ rn6
Intron Retention
Gene
ENSRNOG00000019745 | Actn3
Description
actinin alpha 3 [Source:RGD Symbol;Acc:621792]
Coordinates
chr1:220121763-220122849:-
Coord C1 exon
chr1:220122670-220122849
Coord A exon
chr1:220121910-220122669
Coord C2 exon
chr1:220121763-220121909
Length
760 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
ACTGCCCTCTCGATTCCTAGCAC
3' ss Score
7.56
Exon sequences
Seq C1 exon
GAAGTAGGGCGGCTGGCAGCTGGGCTGGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGACAGCAGGAGCAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGGGCCTAGTCTTTGACAACAAGCACACGGTCTACAGCATGGAG
Seq A exon
GTGGGGTCTCACCCTTGGGAGAAAGGGAAGGGAAGGCTGACCCGATCACAGCTGGATAGAGCCTGTCTGTCCCAGGAGGGTAACCAAATCAGTCTGGCCATCTTTTACAATGTCCCAATGTTACAATGTCCCAATGTTACAATGTCCCAATGTTACAGTGTCCCAATGTTACCATGTTACAATGGCAATTTGGCTATCCTGCAATAGAAAGTGACTTGTCTGGGCTAGGTGTGGTGATGCACATCTCTTATGCCATCACTTGAGATGCTCCAGGATCAGGTCATTCCCAGCTGTGTAGGAAGTTCAAGGTCAGCTTGGGCTTTATGATGCAAGGAGGGAAGGAGGGAGAAAAGAGACCTGTTCAAAGTAACAAAGCAGTCTAAACTCAGGATTGGCCAAGCTGGCCAACCAATACTTAATCAAATTTTAAGATAGAAAGGGATGCTTACAGTCACTTAAGTGAACATTGAGGTAGGTTTAAGAGGTCCAATAAGGGGAAGGATTTGCCCAATGCCACATAGTAGATTAAGAGTACAGTTAACTAGACAGCCAGGTACAGTGGTCCATGTCTTTAATCACGGCATTTGGGAGGTAAAGGCAGGTGGATCTCCATGACTTTGAGGCCAGTCTAATCTACAGAGAGAGTTCCAGGCCTGCCAGGGCTACATAGAGATCCTGTCTCCAAACAAACAGAAAAAGGAGTAGAACTGGAGTAAGAACCAAGGCCTGGCCATTCACTGACTGCCCTCTCGATTCCTAG
Seq C2 exon
CACATCCGTGTGGGCTGGGAGCAGCTGCTCACCTCCATTGCCCGCACCATCAATGAGGTGGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAACAGCTCAACGAGTTCCGGGCATCTTTCAACCACTTTGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019745:ENSRNOT00000026812:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(56.7=100)
A:
NA
C2:
PF0043516=Spectrin=PD(20.2=42.9),PF134991=EF-hand_7=PU(34.2=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTAGGGCGGCTGGCA
R:
GTGGTTGAAAGATGCCCGGAA
Band lengths:
318-1078
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]