BtaINT0013465 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011909 | ACVR1
Description
Bos taurus activin A receptor, type I (ACVR1), mRNA. [Source:RefSeq mRNA;Acc:NM_176663]
Coordinates
chr2:39333823-39337650:+
Coord C1 exon
chr2:39333823-39333922
Coord A exon
chr2:39333923-39337503
Coord C2 exon
chr2:39337504-39337650
Length
3581 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATT
5' ss Score
5.73
3' ss Seq
CTCTGTGCTGCTTTCCACAGGGA
3' ss Score
11.32
Exon sequences
Seq C1 exon
GATTTATTGGATCATTCATGTACATCGGGAAGCGGCTCTGGCCTTCCTTTTCTGGTACAGAGAACAGTGGCCCGTCAGATCACACTGCTGGAGTGTGTTG
Seq A exon
GTAATTCTCTTTTCCCTTTCTTTGTGGGTTCTGTGCGGTGTTTGCTGTGGTTCTAGAAGTATATGACCTTGGAAAATCTGCTGCTGCTTGTCTCCTGCTTGTTAAATGTACGGAGGTGTGAGATATCCCTGTGGAGTGGCTGTGCTTCTGCTCTGGGACTTATGTTGGAGCATTTGAACTTGGTAAAGTTCTTTTCAAAGGAGCCTGCCACTAGTTAGTATAGAAAATACCTAGTCAAAGGCTTTCAGTTTTAAGTAAACCCTTTATGATATTGGGACTGCTTGAAAATGAACTAATATGGCTGCTACTGACCAAAGATAGGCATTGGTGAGTCTGAGGTAAGTTGGTTTTTGGACAATAATCTTGATTGTGGCAATTTTTTACTTTCTCATTCTTCCCCTTTAAAAAAAAAATGAAATAAATTCGCCAAAGCTACCCTTATAAGTCCTTTATTTAAAGGAGCTATGTACATTTCTCTATGGCCTCTCATATTTTTGTTTTCTGTATCAGACTATATTTGTGTAGAGATGTAATCATAGTGTGTATGTAATGTGTCCCTGTTTTTTGTTTTAAGCTCATACACATTTTCATGTATTTGTACACATCACAGGTATCTGAGTGGTTGTGTAATTGTTGAGTAATAACTTTAACAATACTTGAAAAAAAAATTGGCACATACTGCTTCTTTTGAGTGAGCAGAATAAACTTCCAGGAATTGGGGCTCCTGGGTCAAATTTTTAACTTTTTATGCCTTGTCTTATATATTGCTGAATTGTCCTCTTGGAAGATGGTGCAGCATGCTTTTTTTTTTTTTTTTTTTTTTTAAGTCCTGATTTTTGGATATTTGCCATTCACATGACAGTTTTCATTAATTTCTCCTTTAGATGGTGTGCAGGGATGGCCACAGTAGCAGTAATGGATTAGAACCATCTCCACACACTCCTCCTGGTTCTCCCAGTTTGAGAGGCGTGAGCTGGCTTTGCAGCTCCTGCCGTCTCATTTTTGGCTTTTGGGAGGTGACTGGCCCATCCTAGGCGGCTTCACCCTTGGCTGCTACCCTCCAACTTTTCCTGGTTTCATGGGAGCCAGGACATCCCCAAATACAGCAGTGGAAGGCAGGTGGCAGAGGTAGTCCAAATAGCGACCGCCACCTGCAGGAACTCAGGCTGCTGGCAGGAGCCTGTGGCCTTTCTCTAGGTCTGCTTTAGCTACTGTGATTGTTTCTGAACTCCCACTTCATGCTTCTGCTCCACGGTGGACTGTGAGTAGGGAAAATATTAACAAAAGTGGAAAAGCTCCCAACATACTCACTGCTTACAACCAAGGTGGTTGTCTTATACCAGCTAACACCCTATTTGATTATGAACAAGGGTGACTGGATTGGGATCAGAAGGCAGTGATCCCAATGCTGCTGTCCCATGGTACTCACCATTCACGCAACAGCAGCCCTCAGAGGTGGACCCCAGAGTCCAGAGGACAAAATGATACTGCATCTTTAAAAATGCATACTCTTTGTGGTTGTAACGATATTCTTCAGCATTTTTTAAAATGGTTCAGATTCATCATTTTACTGCCTTAATGCTAAAGAGCCATGCATTTCAGTAGCTTCTAGTGTTCATGTAGTACAGCCTTGGATAAAAATATACGTCATGAACTGTTTGGATAGTATCTTACAATTTTTGGTTAAAAAATATAGGGAATTGGACTAGGTCAGTTGTTACAGGTGGTGATCAGTGAACCTCTAAATTTCAGGTGTTAAAGCATCCTTTTTTGGGTCTCCATGGCCAGGACTTTGAGGCAGCTCTGCTTCTGTTTTCAGGAACTTATGCATAAGATTGCATTTGCAAAAAGCATTTGACAACTTAAAAGCCTTTGAAAAGCACTGAAGTAGGTTTCTGTTTCAGTTCTGTCTACTTACGCTGACATCTGTCTCTGTTTCCTTTATAAAAAGGATTTGAGGCAACTACATAGTAATGTCCACAATGCTCTGGGGTATTTTTCTTTCCTTCCTAATGGGAATATGAGAACAAAGGGCCAATAAAGATACAGAATGGAACCAAAGGCAGGAGAAGATTAGTGTTCCATTTTGTAGCAGTCCATGCTATACATCTTAGCACTGGTCTTCATCTTAAACTACAAATGCTGGACAATTGCCATGACTTTATTCAAGTTAATCCTGCACCCAATGCGATTTTTGTGACTTGACAGTGGTCCACAGAGACCCTTACTGGGTTCAGGGTCTTTGGATTAGTCCTTTGCATTAGTCATTGGTATTTAGTAGGGAGACACTGCTTATCATAAGGAATCTAGATTGAGCAGGTTTGATTATGCTTCAGGACATAATCTTCTGGACAGACATGCTTTCCTTCTCCATGTTTGGGTTCGCGGTGGCTTAGTTTTGCAGCAAAGAGCTGTATTCCTGTATATGCATATATTCCTGTGTACAGTCATTACCAGCTGAGATTATCATCAGCCACTTGCCTTGGCGGAAGGCCCCACTGCTCTGCAGTTTGGATCTCCTGCTGTAGTGCTCTAGGTTCCGCGTCCATCTTCACCTTTGATTATACCCCGTGATGATCCCCACCGTCTCATGGTAATTCCCGCCTCCACTTAACCTCCCTGATCATCTACCTGTAATTAAGGAGAAGAGTGGAAGCAGGAGCATGTTGTTGACAAGCCGCCAGTTGCGCCAGGACTGTCCTCCATGGATCAGATCACAGCTAGTCACCGTGCTTTGAAATTGTCTTCTCCAAGTGGCCTTTTCGGGGTTGCCCACTTGTGGCCTCACAGGGACTGTCTCACAAGGGAACACCCATAACCACTGTCAGAAATCAGGACTGTTCTGGGATTACATGTGTAAGACTTTGCAGATCCTCTTTGGAAATACATCCTCTGCCAAGAAACCCTTTACGGATGGCAGTGGCTGCCCGTCTGTTTCCTACACCAGTATTGTTCTGTTTGTGTGTGCGTGTGTGTTAATCCTTCAGAGCACACATCTCAAACTTCATAGTCTCCTTTGTGAAAAATAGAAAGGCCTATGTAAATTCACCAGTTTGGACTCTTAGAAAATGTCTGTGTTGATCCATTATGAAGGGGAGTAATCACATAAGCTATTCAATTTAGCCACATACATGTTTCTTGGTTTTCATCAACACTGAAGTCTAATAATCTATACCATTTTCTGAGTCTTACTAACTTTCATGTGCTTTTACAAACCATATGCATTTCATACGTTTTCAGAGAGGGATGTAAATAAATGTAAACTCTGTAGCTAGCAGCTCGTTGTACGAATGCAGGTTCTGTGATATCACAGATATCACAGAACCTGTAACGTGATATCACAATAGGCTGGGACGGGCAGTTTCCACCTTGCTTTTGGATGTCTTTACAAGCAAGAGGTAGTGCTATTTATCAGGTTGGTCATAACATCTTACAGAAAAGCCCAAATGGACTTTCTGGCCAACCTAGCATATTCCCTAGTGGCATTTTTCCAAGGGAGGGTTGAGAGTGGCGGGCACAGTGTTCATTGGTGACCTGTCCTGTCCTCCTGCCCAGTGTCACCTCTGTGCTGCTTTCCACAG
Seq C2 exon
GGAAGGGCAGGTATGGCGAGGTGTGGAGGGGCAGCTGGCAAGGGGAGAACGTCGCTGTGAAGATCTTTTCCTCCCGGGATGAGAAGTCGTGGTTTAGGGAAACAGAATTGTACAACACTGTGATGCTGAGGCATGAAAATATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011909:ENSBTAT00000015797:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
A:
NA
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]