MmuINT0010589 @ mm10
Intron Retention
Gene
ENSMUSG00000026836 | Acvr1
Description
activin A receptor, type 1 [Source:MGI Symbol;Acc:MGI:87911]
Coordinates
chr2:58468514-58474272:-
Coord C1 exon
chr2:58474173-58474272
Coord A exon
chr2:58468661-58474172
Coord C2 exon
chr2:58468514-58468660
Length
5512 bp
Sequences
Splice sites
5' ss Seq
TCGGTAATT
5' ss Score
7.06
3' ss Seq
ATCTGTTTTGCTGTCCACAGGGA
3' ss Score
11.03
Exon sequences
Seq C1 exon
GAACTACTAGATCACTCGTGTACATCAGGAAGTGGCTCCGGTCTTCCTTTCCTGGTACAGAGAACGGTGGCTCGCCAGATAACCCTGTTGGAGTGTGTCG
Seq A exon
GTAATTCTATGTTTCCCTTCCTTTTGGGCAGCAGGCAATGTTGGTTGTGATTCTCGAAGTCAGCCAGGGCTTGGAAAAGTCTGCTTCTTGTTGCTTATTATTGCTTCCTCATTAAATGCAGGAGGTGCCAAGCAACCATGTGGTTATTCCACTTCAGGGGGTGTGAGACAGCCATGGGGGTCTCTGTTCTGTGTGACTCACGGTTGAGAGCTTGCTGAAGTTGTGGTAAGAGAGTCATCCCTGACTAGAACAGACAATGCCTAGCGTGAATCCACGAGGCTGCGTTGAACAGGGGCTGACTGATCTGAAGGAAATGGGCTTCTGGATAGTAAGGTCAGTTGCTGCGTCTTCCCCAGGATTCTTAGCGTCTCCTTCCTCTAACAGGAAGAGTGAGTATGTCAAGTTACTGTGTATCAATTAGACACAAGAGCTTATGAAAATATACATTTAAGAACTCGAGTGAACCTTACTATGTTTTTTTTTTAATTAAGTGCTTAGTACGAAGACCTATATACATTTTGATAGCCTTTCATTTTTCTCCCTATGACATAGTGTAGGTCAGCATATTAATTGTGAAAAAAATTGTACTCCTTTATCCGTTAAAATTTCTAAAAAAAAGAAAAAAATCTGCTGTTGCTGCATGTGGGTATATGACGTATGTGTGTGGGTGTGTGCACGCCACAGCACACGTGGACTTTGGAGGACAGTGCTGTAGAGTTGGTTCTCACACCGTACCTTTATATGGGCTCTGGGGGTTGAACTCATATCATCAGGCTTTGCGGCAAGCGCTTCACCCATTGAACCACCTCAGAGGCCCACCTTCCTTCATTGTTCAGAATGCACACACCTCGTCTGGTGTTGGGAATTATCAGAAGTACTTTAAAAAGCGGTGCAACGGTCAGTTCGGCTAGCAGGTTAGCAGAGATGCGTGAAAAGGATTTGGCACACATTCTTTGGTCTTCTGAATTGGCAGAATGAATTCCAGGAATTGTGAATTTTTGGGTCAGGCATGATTTAAGAATAATAAAATGATGATGGTGACGGCGGTGGCGGCTTCATGAATTCCATGAGGCTGGTACAGAATGCTCTTCTAGCTTTTGAGACAGGGTCTCTTCTGGCCCAGGCAGACCCAAAACTCGGTATCTAGCCGAGAATCGTCTTTTGATGCTCTCTCCTCTCTCTCTTGAGTACTGGGGGTTATTATAAGTATACATCCCTATGGCCAAATAGAGTTTTAAAGTCCTGATTTTCAGGGCTGAGGGGATGGCTCAGATAATAAGTGCTTGTTGCACAAGCATGAAGACTGGATTTTGATCCCCAGTGCCTATGTAGAAAAGCTTGCACAGTGGCATGTATGTATGTGCCTATAGTCTCAGTGCTGGGGATGCAGAAAGGGCAAGATCTGTGGAGTTTGCTGGCCAAGCAGTCTAGGTTTATCTGTGAGCCTTAGGTTTAGTCTGAAACCTGTCTCAATTAAGTAAGTGACTGAGCCAAACACCCAGTATTAGCGTCACGTATATATACGTAGCTGCCCTCCCCTTCCCATTCCCCCCACACATGAAGGACACACTTTATTTTACACTTGATCTTAGCCAAAAGGCCGAGAAGCGATCACACTTTATTTTAAATACAATCCTCAGTTTCACTATTTGTATGTGGAGTGTAGATATTTGCAGGTAGCATGACGGGTTTTGTCAGCTTCTCATTGAGATGGTGTGTAGGAATGCCTTGTATTGTCTCACCCCTTCTGGTGAGCAGGCTTTTTGGGTGGCTATAGCAGCTCCTGCCTTCTGACAGTCTGTTTGGCGGACGCTGTCGCAGGCTATTTGATCACATTGTGAATCAGAAAAACCCTGTGGTGGTGTGGCTCAGCCCTAGCACACACCTTTAATCCAAAGAGCTTTCTTCGAATGGAATTATAAAGTCAGCCACAGGTCAAGAGGCAGGGCAAGCAACCAGTTGACAGGGAGTGAACATAGGAAAACCCAGGAAAGAGAAAGGCGGGTCTTTGAGTTGAGGGGTATCTAACTATATCATGGAGGAGAAAGAGCCTTTTTTCATCTGGGACATGGTGAACTAGGAAGGTCAGCCGGGTGCTTTCTCTGCCTTTCGGAGCTAGCAGGCTTTCACCACAGCATCTGGCTTTGGAGTCTTCATTCGGGATACCAAATGTTTGGGATTTTGTTTTAAAAACAACAGGAAGCAGCTGACCATTATGAACTGGTCCCTGCGCTTTCTGCCATATGAAGGAGGAACAGTGTCAAATCTAGTAGTAAGATCTGCAGTGGGCAGCACGGCTTGCCTGTGACACACAGGGGCCAGCAAAGGAGCTGTGGTACCTTTTCCCCAGGTCTGCACCTACTGTTCCTATTTCCCATTCTCTGCAGCTCCACCACAACTGACTAAGACTAGAAAGAGATGGAGAAACAAAACAAACAAAACAACAACAACAAAACAGAGGCACTCAGCACCCACAACCAGAATGGTTGTCTTGACGTCTAACTGGCATCCTGTTTGTGTATGAACAAGGATACCTGGGTAGTGATGGCAGGCAGCAGAGGGGCCATGCACCTGCTGCTCCTGTCTTCTTGCCCCAACAACCCATCACTCACAGATAGTCCCACATACCTCAGAGACTGGCTCCAGAGTCTTGCTCCTCTGAACTGTCTACAGTGTCGCACTCGATAGATGCTCTTCAACATTTTTCACCACTGTAAATTTAACTATTGCATTTTGGGGGTTGACATTAGAGCCTGGTGGGTGGAGAGCCTGTTCAGAAGTTTTTTGTTTTTGTGTCCAAGGTGTAGCTTGGCGGGAAAAGATGGATAGATGATCACTTTAGTTCAAGAACGTGGGGATCTGACCATGTCAACCCTTCCAGCCCTATGCATCCTCTTTGTGGGACTTTCTGGCCAGGGACTTTTGGGGAACTGTACCACTCTTTTAGTGGCTTTGACATAAGATTACATTAGCAAAAAGCATTTGACAGCCATTAAAATAGATTTCTGTTCTGATTTAATCCACCTACCATGTCGTATATTTTCTTTTCTTAACTTAAAAAAAAAAAAAAGATTTACAACAACAAACAACTTTGTATCCACAATTCTTTGGGATGTTTTTCTTGCCTTCTCAGTGAAACAGTGACTCCCCAGAGAAAATCAAAAAGTTGCAAGATGGAACAAAGGCAGGAAAAGCTTAGCATTTATTTCCTGCTTTTGTAGCTTCTGGCTTGGTGGCATCTTCAGGCAGTTAGTCCTCATCTTGAACAGAAAGGTTGAGCCACTCCTACGACTTGATTAAAATGACTTGTAAACCAAGTAGACTTTGTGTGATTATTGACAGTAGCTCACAAGGAACTCTGGCCTCTCTTAGCATCCCTTTATATTAGTCATTGCTATTGGATAGGGTTATCAGTTCTTGTCATGGAAGCTCAGTTTGCTGGATATCCGTGCTGCCACCTCTGGAGCTGGATGGTACCCAGTGCCTCACACCTGTGAGGCAGGCACTCTATCGACAAGTCGCATCCCCTGCCCTTGGAGCTTTTGTGACAGTTTCAGGTATGTCACTCTGGCACACCTGCTTTCTTTCTCTGTGTAGGGTCTTATTGGCTTAGTTTTCCAGCAGAAGATTGTACTTGTGTGCAGGCAGGTGGCACCACAGCTGCCTATTACAGCCCCGTGATGGTGCAGTCACCACATGCCTGGGCAGAAAGCCTCATTGCACTGTAGTTTCGGTTCCCGCTGCACGCCTGTCATCCAAGCCGACTACACCTCATGTTGACCCCCACTGGTTTTGAGATAATGACATCCTCTTCCCTATCTCTTTGATCATCTCTACCTATAATTAAAGAGATGACTGGAAGGGGGACATGCCCTTGATAAGCATGTGGCTACTACATAGAGGTGGGGGGAGGGGCATGAATCAGACAGGTCAGATCCCAGCTGAAGTTACCCTATTTTGTAAACTATGCTCTTCAAGTTACTAAAATGAAATCCTGAATTATATTAAGTGTATAGGGGTTTTGCCTGCATGTATGTCTGGGTATCCCAAGTATGCCTCGTGTTTGAGGAGGTAAGAAGAGGGCATTGCATTCCCTGGTACTGATGTAATAATAGAAGGGTGTGTGCTGCGTGGGTTCTTGGAATCAAATCTGGGTCGTCCGGAAGAGCCTCCAAGACTCTTAACCCCTGAGCCATTTCTTCAGCCCTCGGGTGACTTAAGAAATGTTTTATCTACCAGTTTTGTGTGTGTATGTTTATGGCGCACATATGTGACTGTGCTTTGTGGAGTCAGTTCTCTATTTTCACTTTTATATAGATTCTAGAGTCCGAACCCAGGATCACACTTGGCAAGCTCATTTGCTTGCTGGTACTGTCTTTCTAACTGCCAAAGGCTCTTTATTTTAGTGTAGTCTGAGTGTGACATCACTGGGGCACATCTAAACCAACACCCTGACCAGTGTCAGAAGTTAGAGCTCTTCTGGAATTATGTCTATGACTTTGAAACTCTGCTTTTGAAATATATCTTTCTCCAAGAAACCCCTTGGAGGTGGTGGTTCACAACCTTCTACCAGCACTGGGGACTGTCATTAATCTCCAGGATGTCAAACTGCCCCTCTGTGGGGCAAGAGGAGCTTAAATATATTCAGGCATTTGGGCTGAGAAATGCTTCTCAGGGTCCAGTGGAAAGGGGGGGAACCAGAGAAACCATCTAGTTATTTAGATATATACCCCTACCCCTTGGGCTTTTGATGCTACATTGAAATTTAGTGATCAGTAGTATGTGCTAAATTGTACTACCTTTCATGTGTTTTGAAAAACTAGATGCCAAAAGTTTCTAGCCTTTTGACATTGTGACTTTCCACTGTCATCTACAAACAGGTTGAGCTGCCTGCATAGTTAGTCTGGGGCACAAGTCAGACACCCTCAGGAAAGCAACTTAAATATAAATGTGAAGTTAGTTATCAGGTACTGTACTGACTGGAAGGCAGATTCCTGCCATGATTCAACTGGTAGGGAAAGATAGGTTTTACCTTATTTTTGTACATCTTTATAGGTGAAGTATTTGCAGTTCTAGACTGAGTTTGTCTAGCAAATAATGAAGAGTTTGGGGCATCAGGCTTTGTTTACTACTAGGAGTTTCTTGGTCAGGCTGTGTGTCCTGTCTTTACCCTTCTATACAACAAAGAATAAATTCAGTGTCACACAAAGAAACACAGAACCAATGCAAAGTTATTGGCATGGCAGTTTCTTTTCAAAAAGGATCTACCAGAACCCAAATCCAGCTAGTGAACTCATGTGCCAAATGGCCTCCATATTTTATTTTTGATACAGGTGGTGACTTTGTTCTATGCCATGGGTGGGAGCTTGGCTTCACAGTCTGACATAATTGGTTAGTCAGAAGAGAAGAGCAGGAGGTTCAAATATAAGGACACTGTCGGGTTCACTGTGTTTGAGAGGAAAAGGAAAGCCAACCCATTTCTTACATATATCATCTGTTTTGCTGTCCACAG
Seq C2 exon
GGAAGGGCCGGTATGGAGAAGTATGGAGGGGCAGCTGGCAAGGCGAAAATGTCGCTGTGAAGATCTTCTCCTCCCGAGACGAGAAGTCATGGTTCAGGGAGACGGAATTGTACAACACTGTGATGTTGAGGCATGAAAATATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026836:ENSMUST00000112599:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
A:
NA
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types