RnoINT0012761 @ rn6
Intron Retention
Gene
ENSRNOG00000005033 | Acvr1
Description
activin A receptor type 1 [Source:RGD Symbol;Acc:620200]
Coordinates
chr3:44453465-44459284:-
Coord C1 exon
chr3:44459185-44459284
Coord A exon
chr3:44453612-44459184
Coord C2 exon
chr3:44453465-44453611
Length
5573 bp
Sequences
Splice sites
5' ss Seq
TCGGTAATT
5' ss Score
7.06
3' ss Seq
CTCTGTTTTGCTCTCCATAGGGA
3' ss Score
11.45
Exon sequences
Seq C1 exon
GAATTACTAGATCACTCGTGTACATCAGGAAGTGGCTCCGGTCTTCCTTTTCTGGTACAGAGAACTGTGGCTCGACAGATAACCCTGTTGGAGTGTGTCG
Seq A exon
GTAATTCTTCGTTTCTCTTCCTTTTGGGCAATAGGCAGTGTTACTTGGGAATCTAGACGTAGGCTGGAGCTTGGAAGTCTGCTTCTTGTTGCTTCTTATTGCTTCCCCATTAAACGCTGGAGGTGCCAAGCAACCCTGTGGTTATTCCACTTCAGGGGGTGTGAGATAGCCATGGGGTCTCTGTTCTCTGTGACTCATACTGGAGAACTTGCTGAGCTTCTGATAAGGGAGTCATACACTGACTGGAACACACAATACCTAGCATGAATCCACGCGGCTCTGTTGAACAGGGACTGACCGATCTGAAGTAAATAGGCTTCTGGATTGCAAGGTCGCTTGCTGAGGTTTTCCCGTGGTTCCTACTGTCTCCTTCCTCTAAAAGGAAGAATGAGTGTGTCTAGTTACTCTGTGTCAGTTGGACACAAAAGCTTATGAAAATACACATTTAAAAACTAGAGTGAATTTTACTAAGTTTTCTTTTTAATTAAGTGCTTACTACAAAGAGCTATATGCGTTTTAATAGCCTTTCATTTTTTTCTCCCTTTGACATATTTTAGGTTGGCTTATTAATTATGAAAAATTTGTGCTCCTTTATCTACTAAAATTTTAAAAATCTGTTGTTGTTACATATGTGTATATGACATATGTGTGTGGGTGTGTGCGTGCCACAACACGTGGAAGTCAGAGGACAGTGCTGTTGACTTGGTTCTCACACCATACCTTTATGTGGGCTCTGGGGATTGAACTCAGATATCAGGAGTTCATGTGGCAAGCGCTTTACCCGTTGAACCAACTCAGTGGCCCACCTTCCTTCATTTTAAGAGTGTACGCGCCTTTTCCGGTGCTGGGGATCGTCAGAAGTACTTTAAAAGGCTGAGCAGCAGTTAGTTTGGCTGTCGGGTTAGCAAACAAACATGTTTAAAAAGGATTTGGCACACTGTTTTTTTGTCTCCTGAATTGGCAGAATGAACTCCCAGGAATTGTGTATTTCTGGGTCAATTCCAGGGATTGTGATTTAATAATAATAAAATGATGATGATGGTGTTGTTGTTGGTGGTGTTGGTGATGATGATGGTGGTGGTGGTGGTGATGATGATGATGATGGTATGGTGGTGGTGATGGTGATGGTGATGATGATGGTAGCTTCATGAATTCTATGAGGTTGATGCAGAATGCTTTGCTTGTTTTCGAGACAGGGTCTCTTCTTGCCCAGGCAGACCCAAAACTCAGTATGTAGCCAAGGATCCTCTCCCCTCTATCTCTTGAGTACTGGTGATTATTATAAGTACATCTCTGTGGCCCAGTCCAGCCTTAAAGTCCCGATTTTCAGGGCTGAGGGAATGGCTCAGACCAAAAGTGCTTGAGGACTTGATTTTGATCCCCAGTGCCTACGTAGAAAAGCTTGTGCAGTGGCAAGCTTATAGTTCCAGTACTGGGGGATGCAGAAACAGGAAGATCTGTGGAGTTTGCTGGCCAAGCAGTCTAGTTTTATCTGTCAGCCTTAGGTTTAGTCAGAAACCCTGTCTCAAAAAGGTGGCTGAGACAAACATCCAGTGTTAATGTCATGTATACATATGTATTCCCCCGTTTCCCCAACTACATTCACGTAAGCACACTTCAAATACAGTCCTCAGTTTCACTATTTTCATGTGGAGAGTAGGTATTTGCATGTAGCATGTTAGGTTTTGTCAGCTTCTCATTGAGATGGTATGTGGGTATGGTCTGGACACTTCCGGCGAGCAGGGCTGGGTGGGTATAGCAGCTCCGGCCTTCTGACTGACTGTTTTGCAGAAGCTGTTGCAGGATATTCGATCCCATTGTGAACCAGCAAAACCCTGTGGTGCTGTGGTTCATCCCTTGCACACATCTTTAGTCAGAGCTTTCTGTAAATACGATTATAAAGTTAGTGACAGGTCAAGAGGCAACCAGGGCAACCAATTGACAGGGAATGAACCTAGGAAAACCAAAGAAAGAGAAAGGAGGGTCTTTGAGCTGAGGGTATTTAACCATATCACGGAGGAGGGAAGAGCTTAGCTTCTGGGACATGGCGAAGTAGAAAGGTCAGCCAAGTGCTTTCTCTGACTCTCTGAGCTAGCAGGCTTTCACCCTAGCATCTGGCTTCAGGGTCTTCATTTGGGAAATCAAACATTTGGGGTTTTGTTTCTTTGCCCATCGTGAGCTGACCCCACCACTTGCTGCTGTATGAGGGAGGAACAATGTCAAATCCAGAAGTAAGCTCTGCAGGGTGCAGCACTGCCTGCCTATGACACGCAGGGGCCAGTTAAAGAGCTGTGGGACCTTTGCCCCAGGTCTGCACCTACTGTACCGATTCCCCACTCCCTGTATATAGCTCCACCACAGCTGACTGAGACTAGAAAGAGGTGGAAAAACAAAATGAATCAAACAAAAACAACAAACAAAACAAACATCAACAACACCACAACAGATGGACTCCATCACCAACCAGAATGGTCTTCTCCTTGACATTTAAGTAGCATCCTGTTTATGTGTTAGCAAGGATGCCTGGGTAGAGGTGGGAGGCAACAAAGGGGCCATACACCTGCCTCTCCTGTCTTCTTCTTGCCCCAATAACTCATCACTCACAGATAGTCCCAAATACCAAACTTCATCCTCAGAGACTGGCTCCAGAGTCTTCCTTCTCTGACCTGTTCTACAGTGTCTGACTCAGTAGGTGTTCTTCAACATTTAGAACCAGTGTAAGTCCAACTATTGCATTTTGGGGGGTTGACATTGGAGCCTGGTGGGTCCAGTGCCTGTACAGGAATTTTTGTGTTTGTGTGGTGTAGCTTTGAGGGAAAAGGTGGATAAATGATCACTGTAGTTCAAGAAAGTGGGGAGCTGACCATGTCAACCCTTGTCCAGCCCTAGGCATCCTCTTTGTGGCGCTCTCTGGCCCGGGACACTTAGAGAACTGTACTACTCTTTTAGTGGCTTTGGCATAAGGTTACATTAGCAAAAAGCATTCAATAACCGTTAAAATAAATTTCTGTTTTTAATCCACCTACCATGCCATATATTTTATCTTTTTAATTAAAAAAAAACAAAACCAAAGACTTATAACAACAAATAACTTTGTATCCACAATTCTTTGGGTTATTGTTCTTTCCTTCTCAGTGAAACTGACTCCAAAGAGAGAGTAAAGTTGCAAAATGGAACAAAGGCAGGAAAAACTTAGCATTCTTTTCCCACTCTGTAGCTTCGGTTTTGTAGCATCTTAACACTAGTCCCCATCTTGAACAGAAAGGTTGAGCCATCCCTACTACCTGACTAAAATGACCGGTAAACCAATTAGACTGTTTGATTATTGACAGTGGCCCACAACAGACTCTGGTCACTCTCGGCATCTCTCTATATTAGCCATTGCTGTTGGATAGTGTTAGTTCTTATCACAGAAGCTCAGTTCGGTGGATATCTGTGAGCTGGATGGTACCCAGTGTGTCACACCCATGAGGTAGGCATTCTATTGCGAAGCCACATCCCTAGCCCTTGGTGCTTTTGTGACTGTTTTGGGTGCATCACTTGGACACACCTGCTTTCTTTCTATGTTTAGGGTCTTATTGGCTTAGTTTTCTAACAGAAAACTGTACTTGTATGCAGGCAGGTGACACTGCCCCTGCCTATTACAGCCCTGTGATGGTGCAGTCACCACACGCCTGGGCAGAGAGCCTCATTCCAGTGTAGTTTCAGCTCCCACTGCTCGCCTGCCATCCGGGCTGACTACACCCCATGTTGACCCCCCTGGTTTTGAGATAATGACCTCCTCTTCACAATCTCTTTGATCATCTCTACCTATAATTAAAGAGATGACTAGAAGGGGGAACATGCCCTTGATAAACACGCGGCTACTGCATAGAGGTAGGGGCCATGAATCAGACAGGTCAGATCCCAGCTGAAGTCACCCCATTTTGTAAACTATACTCTTCAAGTAACTAAAAAAAAAACCCAGTATATTGTTTTAAATGTGTGGGACTTTTGCCTGAATGTGTGTTTAGATATCACAAGTATGCCTCATGCCTGAGGAGGTAAGAAGAGAGCATTGGATTCTCTGGTACTAAACTAATAGAAGGCTGTGTGCCGCTGTGACTTCTGGGAATCAAATCTGGGTCCTGAGGAAGAGCATCCAGGGCTCCTAATCCCTGAGCCATTTCTCCAGCTCTCAGGCAACTTAAAAATGTTTTATTAGTTTTGCATGTGTACGTTTATGATGCACATATGTGCCTGTGGATGCCGGAGGACACTTTGTGGAGTCAGTTCTCTATTTCCACTTTTATAGACTCTAGGGACCAAACTAGGATCAGCCTTAGCAAGCACCTTCACTTGCTTCACCATCTCTCTGGCTACCAAATGCTCTTAGTGTAGCCCACTTCTGACATCATCGGGACCCATCTACACAAACGCCATGGCCAGCATCGGGAGTCAGAGCTATTCTGGAATGATATGTTTATAGCTTTGAAAATCTGTGTTTGAAATATATCTTTCTCCAAGAAAGGAGAGGTCGTTCACAACCTTCTGCCAGCTCTGTGGATTGTCATTAATCTCTAGGACCTCAAACTGCCCCTCTGCGGGGCCAGAGGAGCTTAAGTACATCCAGGTATTTGTGCTGAGAAACACTTCTAAGCGTCCAGTGGGAAGGAGGGGAAACCAGAGAAACCATTTAGTTATTCAGATACATACCCTTGCCTCTTTGGCTTTTGAAGCTACATGGAAATTTAATAATCAGTATTATTTTCAAAATTGTACTACCTTTCATGTGTTTTGGAAAACTGGATGCCAAAGGTTTTTAGCCTGTTGACATTGTGACTTCCATTGTCGTCTACATATAGGTTGGGCTGCCTGCACAGCTAGCCTGGGACACAAGTCAGACACCCTCAGGAGTTGACTTGGGAGTTAAATATAAATGTGAAATTAGCTAGTTATCAGGTAATTTTGCCATAGTTTCCTGTCACTATAAGGCAGATAAGGAAAGATAGGTTTTTACCTTCTTTTTGTATATCTTTGCATTCCTAAACCGAGTTTGTCTAGTGAATAATGAGGAGTTAAGAGTTTCGGACATCAGGCTGGAGTTGCTTGGTCAGGCTGTGTGTCCTGTTTTTACCCTTCTATACATTAAAAACAAAGAATAAATTCAGTGTCACACAAAGAAACACATGACCAATGTAAGAAATTATGGGCACAGCAATCCTTTTTTGCAAAAAGGATCTACCAGAACCCAAATCTAGCTAGTGCGTACATGTGTCGAAATGGCTTCCTTTTTTTTTTTTTTTTTTTTTGGAGCCAAGGACCAAACCCAGGGCCTTGTGCTTGCTAGGCAAGAGCTCTACCACTGAGCTAAATCCCCAACCCCGCTTCCATGTTTTATTTTTGATGCAGGTGGGGACTTTGTTCTATCCTATGGGCGGGAGCGTGGCCTCACAGCCTGACATAATTGGTTAATCATCGAAGAGGCTAGCCAGAGGCTTAACTCTAAGGTCACTGTCGGGACTCTGTACATTCAATTGGAAAACCGAATCCCAACCGTTTCTCCCATTTATCCTCTGTTTTGCTCTCCATAG
Seq C2 exon
GGAAGGGCCGGTATGGAGAAGTGTGGAGGGGCAGCTGGCAAGGCGAAAATGTTGCTGTGAAGATCTTCTCCTCCCGTGATGAGAAGTCGTGGTTCAGGGAGACAGAATTGTACAACACGGTGATGCTGAGGCATGAGAATATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005033:ENSRNOT00000006963:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)
A:
NA
C2:
PF0006920=Pkinase=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]