BtaINT0013472 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013555 | ACVR1B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSQ2]
Coordinates
chr5:28048202-28051459:-
Coord C1 exon
chr5:28051211-28051459
Coord A exon
chr5:28048433-28051210
Coord C2 exon
chr5:28048202-28048432
Length
2778 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TTCCCTTCTTTGGTCCCCAGGGT
3' ss Score
10.56
Exon sequences
Seq C1 exon
GTCACCTCAAGGAGCCTGAGCACCCCTCCATGTGGGGGCCTGTGGAGCTGGTGGGCATTATTGCCGGCCCAGTGTTCCTCCTCTTTCTCATCATCATCATTGTTTTCCTCGTCATTAACTATCATCAGCGTGTCTATCACAACCGCCAGAGGCTGGACATGGAGGACCCCTCGTGTGAGATGTGTCTCTCCAAGGACAAGACGCTCCAGGACCTGGTCTATGACCTCTCCACGTCAGGGTCTGGCTCAG
Seq A exon
GTACCGCCTCTTCAGGCCTCGTACCGGCCGTTAGCCTTCCTTGCTGCCTCCCAGCACGATGGAACATTCAGGAAGAAGGCTGGCCATGTGCTTTCAGAATCCCCTTTCTTTGGGAGTCTTGACACGTAATAAGATGATGGGGTTCCCAGAAAATCTCTCATTCTCTGAAATTCCAGGGATGAGCTGCAAAACTCTCCCTTCCAGAGTCCCTGCCTCTCTTCAAGTCTTGTAACCATGCAGCTATTAAAATTCACCTAGTTCCACCTGAGCAGCCGAGTGCTCAATGTCAGGGCCCCTTTGGAGAAACTGGAGTGTGCCGGGTTCCTGTGAGGTGGTGGCAGCTAATCATTGATCTGTGAGCAACCGCAAGGGGAGTTTGAGGACACCGAGTAAGGCCAGAGAGCTGGAGTTGGGTAAATCATTGACTCGTACCAGTTGCCCAAGGGTTTATGTGGCAGTTGAAAGAAAAGCAGCCAGGGCTTCCAGCGTGGCGTCAGCACCACTTCCGGAGCTGCCTGTCGGTGACCGAGCCTTTCTTAGGTGGACCTCGACGTGAGGCTAGAACTTAGGGTAAGGGCCGTTGGGTGGTTCCGGTCTCAGGGTAGAGCTGAGCTAGCTAGTAGATGTGGCTGTGAGTACATAGCAGTCTTTTTAGGAAGATAAATAATTATTTTAGTGACAGTGGTATTCTGTCCCTATGGGGGAGAATGTGGATACAAAGGCCGCTGTTGCCATTCTAACTCAGACTTACAGGCTCGCGTCCGTGAGAGTCCCACGTGTGTTGGTATATGTTTTTTCAGCCCATGACAGACTCTTCTGTGGGGAAATTACGCCATCAGTCATGGCCAGACATCCCTTCTTGAGCACAGGAATACTTTGAGCTCTGACATGTTCTGAATTTCCGTGGTTTTGCCTTTATTAAGCTCTGCAGTAGAAAGTGCCAAGATGATGGATATATTTAAAAGCTGCATATTTTTAGGAAGAGAGAAAATATATGGCTTGTTCTTTGCTGAAAGAGGGTAGGGCAGTGGTTAGGACTGACTGGCTCTGTGACTTGATTTGCTGCTGGAGGAGGGTCGCTCAGGTTTTCTGGAGTCTTTTTTTAAGATCGGGATTAGCCAAGTCTAGGGCAGGTCCGGGGTGGTTACTCTGTCATCTGCAGTGAAATGATGAGTAACTGTTTCTCTCGGGTTGGTTTAGTCCACTCTTAATTCAGAATATGCAAAGCTCCCAAGGTGCTGGGGTTTTAATCCTGTGGCCTTAAAGTAATACGTCCTTGCTGCTGGTGTAACTTTCAGTTCACACTAACAAGTGTGTGTTGAGCATCCTGTGGGTGATACAGGGTAAACAAGATGAGCAAGAGGCCGAGCCGGGACTGGACAGAAGAGATTGTGGGGAAGGATCTCACAGAGGAGGTTGTGTTTGAAGGGGTCCTGCGTTGGAAGTTTTGAGAGTGGGAAGAGGGCAGGACACGTTCCAGGCCACTGGAAAACCCTCAAGCGAGAGGACAAAAAGACACAAATGTTTACTGAGTGTTCAGGGAATGATCCAGAGGCCGGCTTGTTGTCCAGGCCCTGGTGGGAAAACGCTTGGGCTGTGCTTTGTCTGGTGAGGGGAGAGGCAGCCACCGAAGGCTGTCGTGTGAGAAAGTGTGTGCTCATGTTTTCCTGCGGAAAGAACTCTGGCAGTGGTGTGGAGGGTGAATTCATCCATCTTGCAGCCCCCTGTTAGGGAGGGCAGGGTGAGGCTGGCTATGCGGGGAGTGTGGGGCAAGCCATGTCAGAGGGGAGGCAGAGAGACCCATGGAAGTCTTCCAGAGGCGGTCAGAACAGGTCAGGAAGGCCGGGAGAGGAGGGGGCCAGATTGAGAAGCATTTGGCGGCTCTGTGCTGTGGGAGTTACAGGCATAGACTTTGGAGTCAGTCTTACGTGCTTTGCCATTTACAGCTTGTGTGAATTCCAGTAAATAACTTAACCTTCCCCTTTGAGGCTTAGTTTTCTCATTTGTAAAATGGGCACAATAATAATACCTACCTTATGGGTGGTTGTGAGGAAATGAGGTCATTTATGCAAGTGCCTCATGCATAGTAAACATGCAGTAAACAGCTTGGGGGTTGATAACACTGATTTGTTCAGTCGAGGAGAGGGAGAGAGTAAGTCAGTCACGATGGTGGAGCTGACTGGAGAGGGAGGGAGACACTCCTTGCATGGATCAAATGAGGTGATAAATGAGTCCTATAAAGACAGTGAAATTAATCTGAGAACCAGCCTGGACAGTCGTCCCCCCACCCCCAGTCCTGCTGCATCTGGAGCTCTTGTGAGCAGAACCGTGATCCCTTTGGAGAGCGGTGGGAACTTGGTGTGCCCTGAGCTCGGGTTGGCTTTCATGGGTCACGCAGCACTGCCCTCTAGTGGCCACTGAGCAGAGCAGCCAGAGGCGCTCCGCTCACTCAACCCCTTGACTTTGCTCTTCCACATAAAGCGGCTGTGGGTGGCTTGGCCCACGGGAGGCTGGCTGAAGAGTTAGTAAATCCGGTTAGACAGTTATATTCAGATCTGTCGTCCATACTAGCTGGAAAGAGAACCCGCGTAGATGAGGAGCAGCTAATCACATGCATTTCCCCGTCTGGGCTCCCGAGCTCTCTGTGGTCAGTGGACCACCGTAGCATGGAGGCACTGTGGGAAGGAAAGGCTTCTCCAGTGTGGCCGTGAGAGTGGGAGTTGCAAAGTTCAGCAAATGTATACAATGTCGGCTTTCTTTCCCTTCTTTGGTCCCCAG
Seq C2 exon
GGTTACCCCTTTTTGTCCAGCGCACAGTGGCCCGGACCATCGTTCTACAGGAAATTATTGGCAAGGGCCGGTTTGGAGAAGTGTGGCGCGGCCGCTGGCGGGGCGGTGATGTGGCTGTGAAAATATTCTCTTCTCGGGAGGAACGGTCTTGGTTCCGGGAAGCAGAGATATACCAGACAGTCATGCTTCGCCATGAGAACATCCTCGGGTTCATCGCCGCTGACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013555:ENSBTAT00000046665:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(58.6=20.2)
A:
NA
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]