GgaINT1005393 @ galGal4
Intron Retention
Gene
ENSGALG00000014631 | ACVR1B
Description
activin A receptor, type IB [Source:HGNC Symbol;Acc:HGNC:172]
Coordinates
chrLGE22C19W28_E50C23:3060-5344:-
Coord C1 exon
chrLGE22C19W28_E50C23:5096-5344
Coord A exon
chrLGE22C19W28_E50C23:3291-5095
Coord C2 exon
chrLGE22C19W28_E50C23:3060-3290
Length
1805 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTTCTCCTTTTTCTTTGTAGGTT
3' ss Score
11.81
Exon sequences
Seq C1 exon
GACACCTGAAGGACAACGAGCCCCCATCAAGCTGGGGTCCGGTGGAGCTGGTGGCAGTGATTGCTGGGCCCGTCTTCCTCGTCTTCGTGGTCGTCATCATTGTTGTCTTCGTGTTTCATCACCACCAGCGCGTCTATCACAACCGGCAGCGGCTGGACATGGAGGACCCCTCTTGTGAAATGTGCCTGTCGAAGGACAAGACGCTGCAAGATCTCGTCTACGATCTCTCCACCTCTGGCTCTGGCTCAG
Seq A exon
GTAAGGAGGCTATGACTGGGAATGACCAACGAGGACGTGGAGCTGGAGCGGGTTCTGGCTCAGCTTGCAGAACTGAGGCCGTTGCCTCACCGCCCCACGTGTGCTGCCCTATCAGGAGGAGGAGCAGAGCCTGTTTACAGAGCCTGTTTCATCCCAGGGAGTCCTTGGTTCTGCCACAGCCTGCAGTGTGTTGGTGTGTTCACAGCATTTCAGAACCCATCCCTGGAACACTGAGGGAAACAAGGGTTTTGCTCGTGGCTTTGAGCTGTGAGAGCAGTTAGGTTAAAAAATAAAGGGAATTTTGCAGCAGATGGCAGTGGTGGAGTAACCCAGAGAGGCAGAGGATATAGCAACCTGAGATCCGGCTAGGGAACCAACCTTCACCACATCTGTTATATATGAGCTGTTTGGGGATCTCTTCTGCGCTCACTGTCAGCAGGTGAGCTCTGCAGCTTACATAAGGTGTGGCAGCTGTGCTAGGACTCCTTTCCTATGAGAAGCTTTGGGGTTTTACTGCTTTTCAGCAGTGTCAACCTTCGGGTTCCACTCTTCCCATATTCAGGCTGAAGTTCCTTTGATCTGCCACGGAGCAGTACTTCCCTGGATGCTGTTTTCCTCATTGCTGGTGGTTTGCAGGCTGCTTCAAAGTGATACGCAGCTGCTTTCCAAGCAGCCAAATGGCCCTTCCTACCCAGGTGCAGGAGCTGCTGCCATTTGCTGGTTTGGATCCTGCTTAGGCTGCTGAGCAGTATCAAATGTAGACTTCTGGGTTTGGTAATGTTCCTCTTTGGGCTTTAGGAGTTTCTATTCAGTGTTGATCAGATTCCCTCTCAGTGTTCTCTCCCCCAGGGGAACAGCCCTGGGGTTCTCAGTCTGTCCCCACCAGGAGGTGCTCCAGGACCCCACAGCTCTGCACCCCCTGTGGGGCTCTCCCAGCAGTTCCCAGTCTGCCCTGAACTGGGGAGCCCAGCACTGGGCCCAGTGCTCCAAATGGGGTCTTCCCAGTGCAGGGCAGAGGGGGAAGCACCTCCTTGCCATGCTGGCCCCACTCTGAGCAGTGCCCCTCGGCAACCATTGGCCTTCTTGGCCACCAGAACACACTGCTGGCTTGTGGTCAACCATTAATCAAGCAGGGCATCGGTGGCTTCTTGGCTACTAGGACACACAGTTGGTTCATGGCCACATATTGGTCAACCATTGGCCAATCATTGGTCAACCAGGACACCAGTGGCCTTCCTTGCCACCGGGATACACTGCTGGCTCATGGTCCCCGTTGGCCAACTGTTGGTCGACTGGACACCAGTGACCTTCTTGGCCGCCAAGGCACAGTTGGCTCATGGTCACATACACTGCTGGCTCATGGTCAACTATTGCTCAACCAGGACACCATTGGCCTTCTTGGCCACTGTGTCACGCTGCTGGCTCATGGTCCTCCACTGGCCAATCATTGGTCAACTGGGACACCAGTGACCTTCTTGGCCACCAGGGCACAGTTGGCTCATGGTCACGTGTTGGTCAACCATTGGTGAACCACTGGTCAATCATTGGTCAACCACGGCACCAGTAGCATTCTTGGTCACCAGGACATACTGCTGGTTCATGGCCAAGCATTGGCCAACCGTTGGCCAACTGGGACACCAATGGGCTTCCTGGCCACAGGAGACACTGCTATCTCATGGTCAACCATTGGCCAACCATTGGTCATCCGGACACCGGTGGCCTTCCTAGCCGCGATGGCACACCACTGCCTGCTGACAGCCATCTTTTCACTGCAGCAGACCTTCAGTTCTCCTTTTTCTTTGTAG
Seq C2 exon
GTTTGCCACTTTTTGTGCAGCGGACCGTGGCTCGGACGATCGTCCTGCAGGAGATCATTGGGAAGGGCCGCTTTGGGGAGGTGTGGCGCGGCCGATGGCGCGGAGGTGACGTGGCTGTGAAGATCTTCTCTTCCCGTGAGGAACGTTCCTGGTTCAGGGAAGCAGAAATCTACCAAACCGTTATGCTGCGACATGAGAACATCCTGGGCTTCATTGCTGCAGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014631:ENSGALT00000020492:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(58.6=20.2)
A:
NA
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.1=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTTTCATCACCACCAGC
R:
GGATGTTCTCATGTCGCAGCA
Band lengths:
345-2150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]