BtaINT0013487 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018114 | ACVR2A
Description
Bos taurus activin A receptor, type IIA (ACVR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174227]
Coordinates
chr2:48381791-48385333:-
Coord C1 exon
chr2:48385203-48385333
Coord A exon
chr2:48384293-48385202
Coord C2 exon
chr2:48381791-48384292
Length
910 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
AATGTGTTTTTCCTTTTTAGGGA
3' ss Score
12.59
Exon sequences
Seq C1 exon
GACCTGTAGATGAATACATGCTGCCATTTGAGGAAGAAATTGGCCAGCATCCCTCTCTTGAAGACATGCAGGAAGTTGTTGTGCATAAAAAAAAGAGGCCTGTTTTAAGAGATTATTGGCAGAAACATGCT
Seq A exon
GTAAGTTATAGTTAGCTTTTCACTTTAATTTCCAATTAAAAAAAATGCTCATCAGAGGAATGATTTATATTTTTGCACCTTTTCTTTCTGGATTTCCTGAGGCAGAGATCTTGGTACAAGGTATTCTATTCTAGAGTCCTAGAAACAGTGCAGTTAAGGCCACATCTGTACACTCGTGAGGGAGACGGTAAAGTCAGAGCTGTGGGGGACACTTGGCTTTGTGCTCCTGTGTCACAGTGTCTCCTATCTGGAAGGTTTCCAAGGGAAACAAGTGGCTGACTGTGAGCCTGTGGAGAGTTGTATAACCTTGCTGACCACCACCGTCGCATATGATGTCGTTTTAAAAAGTGAAGTACCTAGTATTATTCTATGACAGTTACTGCATTTTGATTGGATGATTTTCAAGTTCATAAGAGACTAGGAATGTGAAGGCTGGAACAATATTGCCCTGGTTATTTTGTTCTAGATATAACTAGAAACATGGATAAGCCAAGTAGAGAATCCTTAAGTGTGGCTTCCTAACCCTTTTCCTACTTATCTGCAAGGTAGAAATGCTGAGAAACTAAGAAAAGAATAAAAATTGGTAAACTTCTCAAAGCCTTAGTTTTGAATTCAGTTCAAAGGTTAGCTTAAATTACCTGCTTTGTGAATAATGATCAGAGATATTTGGAATTAAACAAATCACCTGCTGTGATCATCTCCAGTGCTTAAAAAAAAAAAATACTGTTTTCTCTCAGTGCTTCTCTCCATGTGAGATATTCGAAAGTGAATGTTGACAAATATCAAACTTGGCTAATTTTGAGACTTTCTTTAACCCACAAGAATAGCAATTTCTTTATGAGAGTTTTACTCTAGTTCCCAATAGAAAACAAAAATTGCTATGATATTTAAATGTGTTTTTCCTTTTTAG
Seq C2 exon
GGAATGGCAATGCTCTGTGAAACGATAGAAGAATGTTGGGATCACGATGCAGAAGCCAGGTTATCAGCTGGATGTGTAGGTGAAAGAATTACTCAGATGCAAAGACTAACAAATATCATTACCACAGAGGACATTGTAACAGTGGTCACGATGGTGACAAATGTTGACTTTCCTCCCAAAGAATCTAGTCTATGATGGTTGCACCATGTGTACACACTGAGAAACAGGACTCTCAACTGGAGCTGCTAATGAAACTGCTTGCAGTTTATTTTCTGTGTGAAATGAGTAGGATGTGTCCTAGACGTCTCAGAAAGAAGACTCTCATTTCAAATGGTGGCTCTGGGAGACTTACGGCATTGCCTGTAGCAGAGACATACATGAAGGACACGCGACTAAGAGAAAAGTTGTAAACTCTATAAAGAAACTTTTGAAAAAATGTACATGAAGAATGTGGCCCTCTCCAAATCAAGGATCTTTTTGGACCTGGCTAATCACGTGTTTGAAAACTGACATCAGATTTCTTAATGTCTGTCTGAAGACACTAATTCCTTAAATGAACTACTGCTATTTTTTTTTTTTAAATCAAAAACTTTTCATTTCAGATTTTAAAAGGGTAACTTGTTTTTATTGCATTTGCTGTTGTGTTTCTATAAATGACTATTGTAATGCCAATATGACACAGCTTGTGAATGTTTAGTGTGCTGCTGTTCTGTGTACATAAACAAAGTCATCTAAGTGGGGTACAGTAAAGAGGCTTCCAAGCATTACTTTAACCTCCCTCAACAAGGTATACCTCAGTTCCACGGTTGCTAAATTATAAAATTGAAAACACTAACAAAATTTCAATAATAAATTGACCCATGTTTTGTAACAAGGTATTACAAATTCACTGTGTTATTTAAGAAAAAAGGTAAGCTATGCTTAGTGCCAACAGTAAGTGGCCATTTGTAAAGCAGTGTTTTAGCTTTTCTTGTGCTAGCTTGTGATTTAAGGGAAAAAAAGTGCTGTTTTTTGAAATGAAAAAATGGTGTATTTCCCCCTTTTCTCCCATGTTTTAAAAAAAACTTCATCTTATATCAAGTTCCCAAAATATTGCATACTTAGCTACATATTTTTTTAGGTGTGCTGTGCTTGGGGACTATTTGAAAATTTAAAGCATGATTTAAAATTTTTTAAGTGAGCTGTAACACTGGAAAGCTCTTCATTTTTATTCTTTAAAAATAGATTTTTTTTCCTATTTATATATGTAAAATTGTAGTGTATTTCTTTTCACCAAACAGTGTGTGGGACATTCTTGATCACTGTTTTAGAATCACCTCAGGAAGTGTCATTACCCAGAATTCCTCACTCTCTGCTTTGAGACTTGTAACTTTATTACTATATTTCTGCTTGGTGCCATCTTGTCAGAGTAATATTTGATGTCTGTGATATGTCAAGAATTATCCTAGGATAGAGATTTAAACTTTTAAGCACAGATTTCAGATGTTACTGCTTTAAAACAAATCAGGGATAACAAGTTAAACTTATAACTTAAAATATGCAATGACATTTAGAGGTAACCAATGTTGATATAGGTAACATAGCTTAGCATCCTTCCACAAATTGCTTTTACAACTAACTGATATTAATTTAGGATAGTTCATGCCTTATCCTTGATGAGAAAATCGAACTGATAAGTAGGTGCCAAAGTGCTTTTCAAAACACTATTACATTAGAATATAATTGGATTCCTTCTCAAATTTACAGGCCAAAGCAAAACATTAATTAGATTACTGACCAACAAATAGTCAGTATTATACTATGTACTTTTGTCAGGTCATTTAAAAATCCATGTTAATTTTATAAAAGAATTTTTTATGTGTCACTATCAGGAGCTCACTGTGAATGTGTTATCTTCAAATGGCTATTTAACCACACAGTACACTACATTTTACATAAAACATGCACTTAATCTCTGGGAATAAATTATATTATTTATAAATAATACATAGGTCAACAGACTCTAAGCAGGGAGGGAAAGAAGAGTAACAGCATTGTCGTCAGTGTGCCACACACCATACAGAGAATTGTGTTCTTGGTCACATCATGTACCCAAGGCTTTGTTGTATTTCTAAGAATTCCCATTTCAGTGTTGAGTTTACCTTTATTTCAAAAAGTACCTGGCTTCTCAATTTTTTGGTTTTGCTTCTACCTGGAAACTAATCAAGAAGGGAAAATAATGAGAATGTTCATACATGAAAATTGTTCATCTCTTGAAGACTGATTTCTACCTGTTCTGAACATTTAATCCTGTTTTTAAAAGTTTAAAAAAAAAAGTCAAAGGAAAACAAGGAGTATTATGATGAATGTTTGGCTTATGTGAACACTTAAAGAGTTACATTTATAAGACCAGTTATTCACAAAATAAAGTTTTCTCTTCATGTTAGAAAACGTTTTTAGAAATCCTGGGTATTGTACTTAACTCTAGCTAACCAATTTTACAATAAAACCTGTATCCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018114:ENSBTAT00000024108:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.9=100)
A:
NA
C2:
PF0006920=Pkinase=PD(10.1=44.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTGGCCAGCATCCCTCTC
R:
AGCAGCTCCAGTTGAGAGTCC
Band lengths:
342-1252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]