RnoINT0012782 @ rn6
Intron Retention
Gene
ENSRNOG00000005334 | Acvr2a
Description
activin A receptor type 2A [Source:RGD Symbol;Acc:70911]
Coordinates
chr3:33030644-33034282:+
Coord C1 exon
chr3:33030644-33030774
Coord A exon
chr3:33030775-33031745
Coord C2 exon
chr3:33031746-33034282
Length
971 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GACTGTTCTTCTCCTCTTAGGGA
3' ss Score
10.18
Exon sequences
Seq C1 exon
GACCTGTAGATGAGTACATGTTGCCATTTGAGGAGGAAATTGGCCAGCATCCATCTCTTGAAGATATGCAGGAAGTTGTTGTGCATAAAAAAAAGAGGCCCGTTTTAAGAGATTATTGGCAGAAACACGCA
Seq A exon
GTAAGTTTATACACTTATTTTCCATTTGAGATCTCAAGAAAATACTTTTAGAATGATCTATCAATTCTCCGACCATTTCTCTTCTGGGAAGGTGATCTTCACACAAGGTACCTAAGCTTAGTGGCAGAAGGCTTTGTCTGAAGTCACAAAGCCTAATGCAGAGCAGGCTCCTACTTCAGTAGTCTGATTAAGTTCACAAGTCTCCTGTTTTGAAAGCTCCACGAGGAAACAAATGCCTGGCTCTGAACCCATGGAAAGCTGGATAGTCTTACTGACCATTACCTGCTAATAAATGTTATTTTAACACCTTCTAAGCACCAAATTTTCTCTATTCCATGAAGTTTTAAGTCATTTCTTTCAAGACTTTACAGTTAGAATGGGCAGAACAGCATAGACTTAATTGCGCTGCCAATTTGGCGTTAATATCACTAGAAGCCCAAATAGGAATAAGTAACTACACCCTGAAGCCAAAGATCCGATTCAAGACTGACCTTTTGATCTTAACCGAAAGGGAGAAAAGCTAGTATCAACTTAAGAAAATGATTTTAAAAAACAAAAACAAAACTCTTGTAACCCATGTTAGACTTAGCCGTGCGTCTACTTGAAAAGCTCATACATTGGAATGATCAGATTTATGCAAATGGAATTTTAGAACTTAACCTAAGCCTGCTGTAAGTCCTAATGCTCAGACAGTGACTTATTTTGATGGTATGTAAAATGACATTGAGTAAAAGTGAATGTTCGTCCCGCTATTGCATCACTCACATGCTTTGAGGCAGAAAGATCAGGACGTTGAGACCAACCCTGGCTTGCAAAATGTATCCCTTAAAAAGACCCAGAGTGGGTGCTGGTCAGACTTGGCTTATCTTGAAACCATTATCCCTGGAAATAGCTATTTCATTATGACACTGTTAGCCTGTTCCCTGTCAGGAAACAATGGCTGTTAAGTTTGACTGTTCTTCTCCTCTTAG
Seq C2 exon
GGAATGGCAATGCTCTGTGAAACGATAGAAGAATGCTGGGATCATGATGCAGAAGCCAGGTTATCAGCTGGATGTGTAGGTGAAAGAATTACTCAGATGCAAAGACTAACAAATATAATTACTACAGAGGACATTGTAACAGTGGTCACAATGGTGACAAATGTTGACTTTCCTCCCAAAGAATCTAGTCTATGATGGTTGCACCATCTGTCCACACTGAGAATCGGGACTCTGAACTGGAGCTGCTAAGCTAAGGAAACTGCTTAGTTTATTTTCTGTGTGAAATGAGTAGGGTGCCTCCGGGACACGTATGCAAGCAGCCCCTTGTGGAAAGCATGGATTGGGAGACTTCCTGCAGCGTCTGCAACACGGATATGAAGGGGGTCTAAGGGGAAACTGCGAACTGTAAAGAACTTCTGAAAACTTACACGAAGAATGTGGCCCTCTCCAAATCAAGGATCTTTTGGACCTGGCTAATCAAGTATTTGAAAACTGACATCAGATTTCTTAATGTCTGTCAGAAGACACTAATTCCTTAAATGAACTACTGCTATTTTTTTTAAATCAAAAACTTTTCATTTCAGATTTTAAAAAGGGTAACTTTTTATTGCATTTGCTGTTGTTTCTATAAATGACTATTGTAATGCCAACATGACACAGCTTGTGAATGTGTAGTGTGCTGCTGTTCTGTGTACATAGTCATCAAAGTGGGGTACAGTAAAGAGGCTTCCAAGCATTACTTTAACCTCCCTCAACAAGGTATACCTCAGTTCCACGGTTGCTAAATTATAAAATTGAAAACACTAACAGAATTTGAATAAATCAGTCCATGTTTTATAACAAGGTATTACAAACTCACTGTGTTATTTAAGAAAAAATGGTAAGCTATGCTTAGTGCCAATAGTAAGTGGCTATTTGTAAAGCAGTGTTTTAGCTTTTCTTCTACTGGCTTGTAATTTAGGGAAAACAAATGGCTGTTTTTGAAATGGGAAAAAAAATGGTATTCCCCTCCCCCCCCTTAATCCAGGTCCCAAAATATTGCATACTTAAGTAGTACTTTTTCTTTACAGTGTGCTGTGTTTGGGAAATATTTGAAAACAAAGCATGATTTAAAATTTTTTAAGTGAGCTGTGTGACACTGGAAAGCTCTTCATTTCGCCTCTATTTTTTCCTATTTATATATGTGAAACGGTGGTGTATTTCTTCTTTCACCAAACAGTGTGTGGGATATTCTTATCACTGTTCTGTGATCACCTCAGGAAGTGACATTACTCAGAATTCTTCACTCTGCTTCTAGACTTGTAACTTTATCATTGTACTGCGTGGTGCCATCTTGTCAGAGTAATATTTGATGTCTGTGATATGGAGAGAGTTATCTTAGGATATAGTAACCATTTAGCACAGATTTCAGATATTATTGCTTTAAAACAAATCAGGGATAACAAGTTGAACTTATAACTTACATTATGCAATGATATTAAGAGGTAACCAGTGCTGGTCTAAGGAACACAGCCCAGTCTCCTCCCCAAATTACTTTTACAGCTAACTCTAGATAGTTCATGCCTTATCCTTGCGAAGAAAGTGGAATTGATGGCAAGTAGGTACCAGAGTGCTTTTCAAAATATTACATTAAAATATAATGGGATCTTTCCTCAAGCTTACACAGGCCCAAGTAAAAGATTAATTCCCTGAATTTTTCAATTACCAACAAATAGCCAGTATTATGTTATATACATTTTTATTGAGTCACTTTAACATCCATACATTAATTTTATAAACTTGTTATGTTACTATCAGGAGCTCACTGTGAATGCATTATCTTCAGATGGTTAAGACATCAGACACTACCTTTTACATATAATGTGCACTAATCTCTGGGAAGAATAATCATAAACAATACATAGGTCAACAGACTTTAAGTGGGGAGGATAATAGCATTCTTGTCTGTATGCCACATACCATAGAGAATTGTACGTTGTCTATGTACCCAAGGTGTCACTGTATTCCTAAGATTGCCAAGTTCAGTGTTCACTGTTTTTGACATATTCCTACATATTTGGCCCCTCAAATTTTTGATTCAGGTTTGCTTCCACTTGTAATCAAGGAAAACCATAAGAAAATATGCATACAAGGAAACTTTTCATCCATAAGCAAACTGCTACTGGTTGTAAACATTCAACTCCCTTTAAGAGCTGATACATGAGGGATATTATGACTGTTCGGCTTAGGAAAGCACTACAGATAAATTTTACCAAGACTGGTTCATGATATAAAATGCTTTGTCTTCACGCTAGGGAATTTATGTTTTAGAAATCTTGGGTATTGTATGTAAATCTAGCTTATCAATTTTAAAACTTGTATTCTCTTAAGAACTACATTAACAAGAAAGCCTTTTTTATAAGCAGTAACGTTAAGAATGTTCCAGTGACTACCTGTCCTTATGCCTAGTCTTGTGACTTTCTTTTGCAGGGCATTTTCGTGTTTGGTTTACAGTAAGTGCAGAGTGGGCAGATAGAAAGTTTGAGTTAGGGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005334:ENSRNOT00000007404:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.9=100)
A:
NA
C2:
PF0006920=Pkinase=PD(10.1=44.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAATTGGCCAGCATCCA
R:
GCTCCAGTTCAGAGTCCCGAT
Band lengths:
342-1313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]