DreINT0025830 @ danRer10
Intron Retention
Gene
ENSDARG00000011188 | acvr2aa
Description
activin A receptor, type IIAa [Source:ZFIN;Acc:ZDB-GENE-980526-227]
Coordinates
chr9:25569889-25573931:-
Coord C1 exon
chr9:25573801-25573931
Coord A exon
chr9:25573720-25573800
Coord C2 exon
chr9:25569889-25573719
Length
81 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGT
5' ss Score
9.2
3' ss Seq
CATGTTCCTGTGTCTCTCAGGGT
3' ss Score
10.54
Exon sequences
Seq C1 exon
GTCCAGTTGACGAGTACATGCTTCCGTTTGAGGAGGAGGTGGGCCAACATCCCACTCTAGAGGACATGCAGGAGGTGGTGGTCCATAAAAAGCTACGGCCCACTCTCAGGGAGTGCTGGCAGAAACATCCG
Seq A exon
GTATGTAACAAACCTAATTAAACATGGACGATTCGAAATGAATATTCTGCTGGCTATAATGCATGTTCCTGTGTCTCTCAG
Seq C2 exon
GGTCTGGCCATGCTGTGCGAGACTATAGAAGAGTGTTGGGACCATGAAGCCGAGGCGCGTCTCTCTGCGGGCTGCGTGGAGGAGCGTGTGGTCCAGATGCAGAGGCAGACCAGCGTCTCTGCCCCAGAGGAAATAGTCACCGTTGTAACAATGGTGACCAACGTGGACTATCCCCCAAAGGAGTCTAGTCTATGACTAGAGGATATCAGCATGTGAATTGTGGGCTGACCGAACAGAAAAGATGCGTCGGGGATGGTGGTTGACTGCTCTTCTGACGGCTGGCTTCAGACATGCTGGATGATTGTCCTGTACTTGCGGTTGGAACAAATGCAGACCGTGCATTTTGCGCCGAATCTGGGCTTTATCTGGAGCCAGCTGCGTTTATGTATGTGTGTGTATATATGAACTATTACCACGGGCCGTATTGACGAACGGATTATAAGCTGACGACAAAAGAAGTTGTCGTTTTCTCTTCTCGGAGAAGCAACTTTCCCGTTCGAGGAGCAAGCGAGACTCGTCCTCCGCACAGCGCTCGTGTCATTTCAGTATAAAAAAGGGCAACGTCCATGTAAAAAAACAAAAAAAGAGACACATATTTAATGTGTTCATATGAATGACTATTGTAATGCCAATAAGAAACAGCTTTTTGAATGTGTAGTGTGACGCTGCTGTACAGATATCAACAGAAAGGGTGACGATACAACCCAAATCAACACGTGTTTCCTCTGAAAGCTTTCAGAGTTTCTGTCAGATAACCACCAACCTCTCGACAAGGTATACCTCAGTTTCTCATCCTAATAATACGTTTTTTTTGTAACACTATATGATATAAACGAAAGAGGCTTTTCGATGACCTCCATTTGGCACGGAAGCTTTTTAAATACGGGGAAAACTTTTTTTATATGACAGATTATGCCAAGAAATGATGGCCATTCATAAACCAGTGTTCTGCCTTCTTTCTTTTAGTTGTTCTCTGTGTTGCCCTGCTGTTTAAAATGTGATTTTCTTTTTTCTTTTCTTTTTAGCATTGTGACGGTTTTGTTGAAACCATTTTTGACCTTTATCGAGACCTGTTGAGAAGAAAGCAAATCCCTGAAAATATGAATTTTGTGAAAATAATACAGAAGCACTTACCAATATAGGTTTGCGGTGTCCTCACAACATTGACGTATGTGCATGCCTTGTGTTTTCTTTTCCTTCGTTTTTTTTTTTTTTTACCTCCATCATGTGGAGCTTGTGCATGAGATCCCATTAGCAGTCATGGACAACCCCCTTCATTATTTGTTAAGCTGAAGTATTTCCTGTATTCGGGGCGTCACTCTTTTTGTTTCATTTCCATTTCCATTTGGAATCGCCCAATCCTGGTCTTCTGCATTCTCTCTCTCTGCTTTTATTGTGCTGCGGGTAGAAGACCGGCCTCATGCGCTGCATTCAAACCAGCCTCCTCATGAAGCCTGACCTCGCAAGAGACACGTCACACTGGTTTCAAATCAGCAGCAAGGCCACCTTCTACACACTTCTACAAGAACTGTATCTCAGTATGTCTCAGGAAGCGTTTCCCTTTGCTTTGAGCCCTACGGTGCCATTCTGGTGACCCTTGTTGTATTATGTATGCAAGGGCCCTTGATATAACACCTTATTAGTGTGGTCATATTATGTGCAATAACATCATTAGCAGGGACTGTTTCACAGCTCACTGGCCACTTCCAGTGTGGTAAAAATACAAGCGCCTAGCAAGTTGCTTAAACCGTAATGTACATCACAAACTGAAGTCGACGTCAGGCTTACGACATGCTATGCATATGTTTGACGCCCAGTTTTCTGAGAGTATTAAGCTAATAATATGCTGTAACGGGGACCGAACACATGCAGTAACTTTCAAATCAAGAGTTTTTTTTCTGCTGCTGCTCTTTGTTCACACTGTATTTCAATCCGGTGTGATCTGTTGTGTTTCTGTCTTTGGGATCCACTGTCATTTGGGGAGAGTTTGTTCAGACAGTAGGGAGTCAGTATGAGTCATTACAAATCAGATCATTTTTAAAATAGGTTTGAAATCTGATCTGAGCGTTCACACTGAATCTGTTTTTAATCTGAATTCAAACCACATATTGATGTGATTTTTGAATGGGTTTTGCATTTGTTTCTTACAAGTTGACTTGCAAACAACTAAACTGGTTTGAATCTGATGTGAAGTTGTATTCACCGCTGCCTGTCTGAATGAATCCTGAAATAAGATTCAGTGGTTCATTTCGCTTTCAGTATTAGAGTCATATTATCATCATTAATGAGATCTGAATTCACAAATCTGATTTCAAACCACTTGTGTATTTCTGGATTTGTAATTTGCTGAGACTTCAACTAAACTCATTTGGATCCTAAACTGAATCAGCTTCATCCTGCCTGTCTGAACAAATATGATTCGCTTACTCTTATTTCCACTTGTTTTGCTTTTGATATTACAATCATGCATCATCCTGAATGGTGGAAAAATAAACTGAGATCTAATCTGACCCTTCAGACTCAACAAATGTATGTTTTTATTCTTTTTAAATCTGATCACATTCAGATCTGCTTTGAATCTAATTCATAAATCTGTTTGTTTTTTCATCCATTCAGACTATGACCATCTTAAACTGCTTTGAGTTCGATACAATGTTGGATTTCTGTTGCCTGTCTGAACAAATCCTGATTCAGTGGCTCGCCTGGATTCACTTTGCTTTCATGATGCCGCATGTGATGCATTTGACAATGTTCAGGTTCATACAACTGTATGCAATCAAGCCCTTTCAATGAAAGTTCTCTCTCTCTCTTTCTCCCTCTGTCTACTGTAGCATCTCTCTCTTTCAGCCAGCTCTTTCAGATTGATTTCATCTGACTAACACAAGGGCCTGCTCCACCTCTGGACTCTGTAGATGCGTAATACAAGGTCAGTCGGTTATACGACCAAGTTGGCAGATTGAGTCTGAGTGCGTTTTCCCTTTTGTCTGTAAACACTACACTAAATTGACTGCTGCTGGCCTGTCGAGTGTTTCACCAGGTGCTGTCCTGTTCCCCTGTCTGGTTTTCTTTCTGTTTTGTTTTTTAGCTGGGGAATTTGGAAAAAAGGTTGAATGAGATAAAAAGCCAAACTTTAAAAACAAAATAATCCCCGTGTTTAGTAGGTTTGAAAATGCACCGTATGTACATATGAATGTTGTTTTAGATTGTGAAAAGAGCATGATTTTTTTTTTATGTCTCAGAAAAAAATCCTTTATTGATATTATTATTATTATAAAATATTTTAATGTTAATTTTGTACATCTGTATTTTAGTTTTATTAATTTATATCACGGCCCAACTGGCGTTTTATTCCTCTTCTGGATAAATGAGAAGTGACGCTTCTTCTCGGCGAGATGAAACACTACAAAACGAATCAATGTTTTACCTCAGACTTCCACTTACAGCGTTCAAAAAAGTGTAGCACGACTGACAACATGGTGCGGCGTTACAACTACTGCTCCTGGGAATCGACCAGCAGCTTTTCGCTCTTCATCTTTTCTCTCAGACACACTTTCGACAGCGATTCTTTTCAACTCTCCGCCATCGAGTGAATGTCTCCACTTTACCAAAACACTCCATTTTGAGGTGCGAGGCGAGCAGCTGTATTACTGTTGTGCTGGACATGCCATTTTTCTGTCCACTTTTCTCTTGAGTATTTAACGCATTCAGGGCCTGATCAGACGTAATTGTTACATAATGTACAGATGAAATTTTATGCTACTACTCCCCCTCAAATAAAGTATAGTGACTGCTCTCAAAATTGCGTGGTGTGTGTGTCAATTACTCAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011188:ENSDART00000129522:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.9=100)
A:
NA
C2:
PF0006920=Pkinase=PD(10.4=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTTCCGTTTGAGGAGG
R:
GGCTTCATGGTCCCAACACTC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]