BtaINT0014000 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104404661-104406541:+
Coord C1 exon
chr11:104404661-104404837
Coord A exon
chr11:104404838-104406356
Coord C2 exon
chr11:104406357-104406541
Length
1519 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
CCACCTGCTCTCCCCTGCAGGAT
3' ss Score
12.9
Exon sequences
Seq C1 exon
GGGAGATGCTGCTGCTTTGGGGCAGGCTCGTGTGGAGGAAGATGTGCGGGAAGCCGGCCGGCATGGTTTTCAGCTCCCAAGCCAACACGCTGCTGGTGAGGCAGCGTCTTGTGCGGCCCGGAGGCGGAGTGCTGCTGCGGTATTCAAGCCAGCCTGCCCTGGGAGCCTTCCACCGAG
Seq A exon
GTACGGCGAGGCAGTGGAGCCTCCCCACCCGCCCAGAACCTGCCAGCGGGGCCAGTGCTGATGGGCTGGCGGGCCAGGCAGACAGAGGACTGAGCCATTGCTGTTCAGTTGCTCCGTTGTGCCCCACTCTCTGAGACCCCAGGGGCTGCAGCACACCAGGCTTCCTCGTGCTTCACTGTTTCCCTGAGTGCGCTCATAACCCATGTCCACTGAGTCAGTGCTGCCATCCAACCATCCATCCTCTGTCACCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCCAGTGAGTCTGCTCTTCGCATCAGGTGGCCAGAGTATTGGAGCTTCAGCTTCAGTATCAGTCCTTCCAATGAATATTCAGGGTTGATTTCCTTCAGGATTCACTGGTTTGATCTCCTTGCAGTTCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGTGCTCAGCTTTCTTTGTGGTCCAACTCTCACATCTGTACATGACCACTGGAAAAACCGTAGCTTTGAGCAGACGGACCTTTGTCGGCAAAGTAATGAGCTGACTGCGAATGAAATGCATGGCCTTCCTGGACCCCCTGACACCCCACCCCTGCGCGTGTGGCCAGGATGGGGTCCCGAGCTGTGTGGCCTCCCTTCCTCTTGGGGCCCCATGGCACAAGGGCGCACACCCTCCCTCAGGCCACCATGGCCCCACACCCTGGCCTGGCACTCAGGTCCTTCAGGATCCTTTAAGGGCCTTCTGCAAGCTGCCTTGCCCAGCCCCCCTGAGTGCACTGTCCTCTTGGCTCATCCTCTGCAGAGCAGGGTGTGTGTGCACACGCACCTCATGTGCAGGACAGTGGCCGGGAGCCCTGCAAGCCTGGGGCCCCAGCAGACCCGTGGATAGCCCTCTGGTTTGCTTTGGGGGTCTTGCCCTCTTTCTGCATCCCAAGCTGCTGGAAGGTGGCTTCCCCCGGGGTTCCAGGCACTTCTGGGCCCCCCAGACCTCAGGTGGGAAGTGGGATCCTGGGACCCTTCTTCCTTGGCCCCTCAGCATGGAGCACAGGCCCTGGCTGCTGGCCTGGTCATCGCTCCTCACTTCCCAGGCTCCCCACGCACAGGCACCTACCTCGGGGGAGACTCAGGAGGGCTGCCCCCGGGCCGGGTTTGGTGTGAAGCTCTTTTGCACGTGTGGCTTCCCTGAGGTATCTTAAAAAGTCTGCCCTGCCCAGTGTGTGCTGCTATTCCCTTCACTTTACAGAAGGAACTGCAGCCCGGAGCATTTAAAGCCTTCATTAGGGTCACCCAGCCAGGAAGTGGTAGAGGTGGGGTTCAGTGGGGACTTCTGCCAGGGGGCCCTGATCCTGACCGTGGTGCCGCACCGACCCCCACTGCTGCCTGGCCGTAAGCTGTCCTGGCCTCTGGCAGGAGCAACCATCCCTGGGGCATCCTCTGTGTGTGAGATGGTCCTCTCCCAGTTTGTCCACCTGCTCTCCCCTGCAG
Seq C2 exon
GATGTGACATGCAGCTCTTCGGACCCCGGGGCGAAATCTCGAGCCCATCGATGAGTCCAGATGGGAGGAACGTGGGGGGCTGTCGCATCTTCATCGACGTGGCCCCGTGGGCCCGGATTGCCATCCATGCCCTGACCGTGGACAGCGGCACCAGAGCCGAGGGAACTGATGCCAGTTACATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093:ENSBTAT00000020085:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTGCTGCTTTGGGG
R:
ATCAGTTCCCTCGGCTCTGG
Band lengths:
345-1864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development