GgaINT0124814 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6923587-6924283:+
Coord C1 exon
chr17:6923587-6923763
Coord A exon
chr17:6923764-6924098
Coord C2 exon
chr17:6924099-6924283
Length
335 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
TCTCTTCTGCTCCCTCTCAGAAT
3' ss Score
10.19
Exon sequences
Seq C1 exon
GTGAGGTCGTGCTGTTTTCTGGACGAATGATGTGGCGGACGGGCTGCAGGAAGCTTACTTTGTCTCTGATAAATTCCAGAACAAATACATTGATTGTGAAACAGCGTGTTTTGCTGCCAGGAAATGGGGTCGTTCTTCAGTACAACAGCAGAAATGCAATCAAAAAATATTACCAAG
Seq A exon
GTACTTCACTGGAAGCTTCACTATTGCTTTAGATTTAAGAGACCTATGACAAGGTCTGCAGCGTTCCACAGGTCATGTCTGTCTATGGAAGTCTATTGAAGCCTTGCTCCATCTCTAAGAGCTGATTAGATCCTTTTCAAGGAATGTTGGAATGGATATTATGGACTACCTTTCTGTTTTAAAGGCAAGCTCCCTGCAGGTGTTTGCTGATGCTTGGAGGTTCCCAGACGAAAATCCTTAGAGAATGTTTTCTGCCTGCATTTAATTTAAACATCTTTTTTCCCGGAGATACTGGACAATCCTACTAAATCATTTTCTCTTCTGCTCCCTCTCAG
Seq C2 exon
AATGTGACAAGCAACTGTTTGGTCCCCATGGTGAAATAGTGAACCCTACTCAATCACCTGGTCAAAAACAAGAAGTGGTGTGTCGGACCTTCATCAATGTGGCTCCTCAGCACCACATAGCTATTCGAGGCCTGTATGTTGACCTGAGCCATGAGAGCAACCAAACACACTTTAATTACATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTCGTGCTGTTTTCTGG
R:
TGTTTGGTTGCTCTCATGGCT
Band lengths:
343-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]