GgaINT0124814 @ galGal3
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
NA
Coordinates
chr17:7591636-7592333:+
Coord C1 exon
chr17:7591636-7591812
Coord A exon
chr17:7591813-7592148
Coord C2 exon
chr17:7592149-7592333
Length
336 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
TCTCTTCTGCTCCCTCTCAGATT
3' ss Score
10.89
Exon sequences
Seq C1 exon
GTGAGGTCGTGCTGTTTTCTGGACGAATGATGTGGCGGACGGGCTGCAGGAAGCTTACTTTGTCTCTGATAAATTCCAGAACAAATACATTGATTGTGAAACAGCGTGTTTTGCTGCCAGGAAATGGGGTCGTTCTTCAGTACAACAGCAGAAATGCAATCAAAAAATATTACCAAG
Seq A exon
GTACTTCACTGGAAGCTTCACTATTGCTTTAGATTTAAGAGACCTATGACAAGGTCTGCAGAGTTCCACAGGTCATGTCTGTCTATGGAAGTCTATTGAAGCCTTGCTCCATCTCTTAAGAGCTGATTAGATCCTTTTCAAGGAATGTTGGAATGGATATTATGGACTACCTTTCTGTTTTAAAGGCAAGCTCCCTGCAGGTGTTTGCTGATGCTTGGAGGTTCCCAGACGAAAATCCTTAGAGAATGTTTTCTGCCTGCATTTAATTTAAACATCTTTTTTCCTGGAGATACTGGACAATCCTACTAAATCATTTTCTCTTCTGCTCCCTCTCAG
Seq C2 exon
ATTGTGACAAGCAACTGTTTGGTCCCCATGGTGAAATAGTGAACCCTACTCAATCACCTGGTCAAAACCAAGAAGTGGTGTGTCGGACCTTCATCAATGTGGCTCCTCAGCACCACATAGCTATTCGAGGCCTGTATGTTGACCTGAGCCATGAGAGCAACCAAACACACTTTAATTACATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(56.1=96.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTCGTGCTGTTTTCTGG
R:
TGTTTGGTTGCTCTCATGGCT
Band lengths:
343-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]