BtaINT0014002 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104378769-104379731:+
Coord C1 exon
chr11:104378769-104378777
Coord A exon
chr11:104378778-104379591
Coord C2 exon
chr11:104379592-104379731
Length
814 bp
Sequences
Splice sites
5' ss Seq
CACACACAC
5' ss Score
-21.11
3' ss Seq
CCTGCCCGCTCCCTCACCAGGCC
3' ss Score
11.04
Exon sequences
Seq C1 exon
CACACACAC
Seq A exon
ACACACACACACACACACACACAATAGATGAACAAGGTCCTACTTATAGCACAGGGAACTCTACTCAACTGCTAACTTTTTTTATAATAACCTAAAAGGGAAAAGAACCTGAAAAAGAGTGCACATACATGTGTGTGTGTTTATATAAGGGCTTCCAGGTGGCACAGTGGTAAGAAATCCTCCTGCCAAGCAGGACACTCCAGTTCGATCACTGGGTCGGGAAGATCCCCTGGAGAAGGGCATAGCAACCCTCTCCTGTGTTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTCCATGGGGCTGCAGAGTCAGACATGACTTAACAACTGAACACACACACACACGCACGCGTGTGCACACACACACACACGTATGCACACACGCGTGCACATACACGTATGCACACGTATGCACACACACGCACACACACGCGTAACTGCGTCACCGTGCTGTACATCTGAAACTAACACATTGTAAGTTACTATACATCAGTTAATTAACTAAATAAATGCTTAGCAGATTAATAATTAGAAAAGAACTGGCAAATGGCTCACTCAGTCTCCCTGTGCCAGAGGCAGTTCCCTGCAAGGAAGCTGAGGCTGGGGCCCGCCAACTACCCCCTCCCCACAGTGGATGGCATGGGGGGGCTTCCCACCACCGCGTCTCCAAGCCCACGAGCATAGGGGATGGTGAGGCCTGGCCATGCGGGGCCCTGAGGTCAGCCGACCCGGTGGCCAGAGCCCCGTTTCACCCGCTTTGCAGGACCCCGGCTCTCAGCCCTGCCCGCTCCCTCACCAG
Seq C2 exon
GCCGCCCCCTTGCCCCTCGCCTCCGGAGACGGGCCGCCGGGCACGTCCTGCACCTGGAGCTGCTGGTGGCCGTGGGTCCTGACGTCCACCGGACCCACGGTGAGGAGACAGAGCGCTACGTGCTCACCAACCTCAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093:ENSBTAT00000020085:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0142114=Reprolysin=PU(13.5=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development