HsaINT0003968 @ hg19
Intron Retention
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:1366]
Coordinates
chr9:136288221-136289598:+
Coord C1 exon
chr9:136288221-136288287
Coord A exon
chr9:136288288-136289440
Coord C2 exon
chr9:136289441-136289598
Length
1153 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
CTCTCCCTCTCCCCCTCCAGGCC
3' ss Score
13.15
Exon sequences
Seq C1 exon
AGTTGTCTTCAGGCTTTGGAGCCACAGGCCGTGTCTTCTTACTTGAGCCCTGGTGCTCCCTTAAAAG
Seq A exon
GTACTTGTCCTGGTGTCTTCTCTCCCGGGGGGAGTTTCTCAGGACTTTCAAGGGGTATCTCACCACTGAGTCAGTGGTCTGGGATTTTTGGTGGATCTGGAAGGAGAAGGTCAGAGAAGCTGCTGTCAACCCTGTTAATTAACTCTGTTACTTCCTGCCAAGTTGATATAAGCTGGTCTGGGTGTTCCAGCCAGGCCAGGGTTCTCACCCTAGCTTCTGTTAAATATCACAAGGGAACGGTCACCGATTGGCTGGCCCCTCCTGCCCCATGGCCTCTGCTGAGCTGGCTGATTTTCAGGAGCTCTTGTGGTTTCTGACCGTGGATGTAAATATTTATTCCTTCTGTGGGAAACAAGATAGGTACTGGCTCAGGCTACCTCCTAAGGCCATGGATTTCCTTATGATAAAGGCCTGTCCCCATTGCCCACAGGCCCATGTCTGTGACCTTCTCCGGTGCGAGCCCCCTTCCCAGTAGGGCCATTGGCAACTTGACTAATGGCTGATGGGGGCCAGAGGCAGGTGGGCTAGTGGTCAGGGGCAACAGGAGGGCAAGGCCCACTTTGTGACCTGGTTCTTTGTGGTCTAGGCCAGAGGCACACTGACCAGTGCCTGGGGCCACGCTGGGGGCTGGATGCAGCCGACGCTGTCTGGGTATCCCATAGCCTGGGTCCTTCCAGCGCTGCCGCTCCTGAAAGGCTGGGAGATCATTGCCCAGGGTCCCTGACCCTCTAAGGGCTCCCTTGGGAGAGGACAGTGAGGGCTGGCCTGGGCCCCTGCTTCCCAAGAGACCACTGGGCTCCACTCGTGTTCAGTTTCCTGTCGGGGTCCATGATGTTACTTGTGAAACACCTGTGCCCAGAGCAGGGTCCAGGAGGCAGGGCAGGGGCTTTCCCCTTTGGGCAGAGCCACCAGGGCAGTGGGAATCTTGTCTTGATGGGGTGACCCAAAGCACACAATAGCCCAACAGCTCCTCCTGGGCCCTGCCCTTTGCGTGCCTAGTCACTAATGGGGTCTGGCTCTTGGGGTGGGGGTGACACGCAATGTCTTGACTTCGGAAGGCCATCCTTCCAAGACCTGCCAGCCCCTTTCCTGTTAGCTTTCCACTGCTTGCTCTCTAGAACCATCGCCCTCTGCTCTCCCTCTCCCCCTCCAG
Seq C2 exon
GCCGCCCTCCTTCCCCTGGCTTCCAGAGGCAGAGGCAGAGGCAGAGGCGGGCTGCAGGCGGCATCCTACACCTGGAGCTGCTGGTGGCCGTGGGCCCCGATGTCTTCCAGGCTCACCAGGAGGACACAGAGCGCTATGTGCTCACCAACCTCAACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323-ADAMTS13:NR_024514:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.264
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0142114=Reprolysin=PU(14.1=54.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTCTTCAGGCTTTGGAG
R:
TGTTGAGGTTGGTGAGCACAT
Band lengths:
223-1376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)