GgaINT1005470 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6907166-6909225:+
Coord C1 exon
chr17:6907166-6907261
Coord A exon
chr17:6907262-6909085
Coord C2 exon
chr17:6909086-6909225
Length
1824 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGC
5' ss Score
7.14
3' ss Seq
TGTCCCTTTTTGTTGTTCAGCAG
3' ss Score
7.29
Exon sequences
Seq C1 exon
AAAACGTAAAGCTATCTTTCTTCTTGCAGAGATTTCTCAGAGCTTTGGATGCAGATGATGTTTTCTCTTATTTTGGAACCAGCTCAGTGTCTGATG
Seq A exon
GTATGCAGAGCTCTTTCCTTCTTGATTTTGGAACGCGGTTGTCAGTTTATTCCTAATCCTGTACATTTGATAACACTAAGAACACTTATTAACTAACCCTGCTCTGACAAGTATTTAGCATTTCTGAGCTGTGTTGCTCAGTGAGATAATCCATGTCTCAGTGTGGAAGCAATTGAAGAACTGGGCCAGTATTTAAACTCTGCTTAAGGAGCTATGATAAATCTTTTTCAGCTGTAGTCCTTATTTTCTGTATCAGTATTTTTCTACAAGATTAACAGATCTAAGTCATCTGAATGGGAAGGTATAGACTAAGAATAGCTTTAAATATGCTTGTTAACATTTTAAAATGCACGGGTGGAGTGTTCTAGGTCTGGATTGTTCTGGATAGTTCTACATAAAGGTGCATTTTGAACTGTCACCTTCTTAAAGGAAGGATGCTGTTAATTTGTGAGTTCACCTACTGCTGTTCCCAGTGTCTCTGTTTGGTTTATGGTAATTCTCACTCAGTACTATTTAATGTCTGAGGAAGCAAATCTGTCTCAGCCTTTGCCAAATGAACTGTTCTCATTGACGAGGGAGAGAAGCACAGACCATTCAGGAGCCAGTTCCAGAGCTGTTGTCTGTTCCTAGTCTGAGTACCTCACTTTGGAATAGATGAAGACACAGAAGTTCTTTGCCGATTGACAAACTGACCTTAAAAGGCCACAGCTGTCAGTCAGAGAATAATTTTCCTAAGAAGACAGATCATTACATTTCTTTTCCATGTATCATTATTTTTCATAACTATTTCCCTTCTGTTTGTTTGTTTCTTTGTTCCATGTCTTTCAGTACCTGAGTTTGTTGTTGCTCAGCCAAATTGCTCTTGTAAAGAAGAGCAGATTGGGCTGGTATGTCGGATCCAACGCTGCTCCATTAAGGCTTGGGGAGAAGTGTACACCTTTGAATTCCGAGAGGACCATACCCTCCTTTCCTCTTCCTTTGTGATCAGTCACGCGGTGAACTCTTCCTTTAGCTTAATAAAGCGATTCTCAGGCAACTGCTTTGCAGGTGGAAATCTATTGGCACCTCCTGGGGCTGAGTGTAGAGTCACTTACTGTGAAGGGCAGCTGGTGAGTATGCACTGAACTTATCAGCTTTTCTGTGAGCATTTACAGCCTTTGCAGGCTTCAAACCCCAAACACGTGTGAACCATCCATTTAATAAGTCTGAGTGCTACAAAGAAGAAACAGGAAGGATATGGCACACAGTTCTCCATTGTAGCAAATGTCTGCAATAACTCAGAGGTGGAATTTCATCTCCTCTAGCAAGGAGTCATTGTTTCAGAGGAAGAAAAGATTCATATCAAGCCTGTCAGAAGCAGAGATACGGCCCTGCTGAAGGATCTTGGCTTCTCCAGTCCCCACATTCTCTTCAGAAGCCCTGGAATGGGGGCAAAAACAGCAAGAGGTGAGATGTACAGAGAGGAAGCTCTGGTGGTTCTGCTTTGACAAACTGTCTTCTGGTAGTGAGGTTGTTTGAATGAGCTGAGGAGAAAGAGAGGAAGGTTTCCATCTGTGAGTATATGATTATACTTGATGTATGTTACCTTACTGAGTTGTAAATAGTGCACGTTTTCAATTAAGTGCTCGTTATTTTGATAATACAAAGTTGTTATCAAGGATGAAGACAGGGAAAGTAATCATCTGAAGTGAGAAACTTAGGCAAGTAACCACAGAAATGGTCTTCTAGCAGAAGTATTTTAGTCTTTCAGGAAAAGAGAATGTACTTATAGAATCTTCTGTGCTGCCTGGCATTTTAAACTCTGTGTCCCTTTTTGTTGTTCAG
Seq C2 exon
CAGGGCACTTTGCTCCTCGCCTACAAAAGAGGGCTGATGGAGCTGTCAAACATCTGGAGCTGATGGTTGTAGCAGGTCCTGATGTTTACATGTACCACCAGGAGGACACGGAGCGATATATTCTTACCAACCTGAACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0142114=Reprolysin=PU(14.6=63.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTAAAGCTATCTTTCTTCTTGCA
R:
TGTTCAGGTTGGTAAGAATATATCGC
Band lengths:
231-2055
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]