BtaINT0014349 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104476319-104477621:+
Coord C1 exon
chr11:104476319-104476394
Coord A exon
chr11:104476395-104477518
Coord C2 exon
chr11:104477519-104477621
Length
1124 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCCTGCCTCTTGCTCCCAGGAG
3' ss Score
9.58
Exon sequences
Seq C1 exon
GAAGACGTCCGTCACAGGTGCCGGGAACCGGACCTGCACGGGCACGTCCAAGAGGTACCAGCTATGCAGAGTGCAG
Seq A exon
GTGAGGCCCACCTGGCTGGACCACCGCCCACCCCCCACAACCCGTCACAGGCAGGACTCCAGACGGCTTCCCGGTGGCCCCAGCCCTGTGGATACTCTGTCCTGGGCCTGCCCCCTGCATCCCAAGGAACAGAAGTGGGGGTGGGGGTCCCCAGGCTCAGAATTCCACTCCCTGCCTCAAGTCAAGTCCCTGGTGCCCACTACGGGCTGCGGGCATCTGAGCGGGAAGGACCCGCTTCTGCTGGCAGAGCTCTCATGTGACCTCAGGGTTTGAGATCTCTGGCCACCTGTGCCCCCCTACACCCAGGGTGAACCGTGTTCCCAGGGAGGCTTGATGTCATAGGCGGCCCCGTTCCGGCTGCAGCCCCCACGTACCCCCTCCGTGCCCACGCACTCAGCCCCCGAACCTTCTCTGTTAACCTCGCTCTGCAGCAAGGTGGCTGGGCCGGGCTGGCTGGAAGCAACCACTCTGGCTTGGCCTCCAGGCATTTCACGATGATGGGGCCCGAGCCAGTCTGAACCCCACCCCCAGGGCGGGGTGGGGGGGGCAGACAGGTGACCTTGTGTGTCCTTGTGTCTGTGTGCACGTGTGGGAGTTCAGGGGTCGGTGGAAGTGAGCAGACTGGCTTCTGGGTCAGCCTCATGGGTCAGCTGCCCTCCAGACTCGAGCACAGGAGGGACACTTGGCCAGTTGGGCTTCTGGCCTCCTTGGGCTCCTCTTCCACGAAGTCAAGCCCATTCAGTCAATGCCCATGTCCCGGGCCCCGTGGCTGTGGCTGCAGACACGCAGATGGGCCCCTTTCCACAGGAGGCAGGGAGAGCACAGGCCAGGCTGGTGTCCCCGCAGCTCCATGGGCAGCGGGGGAGACGGCCAGGGTGGTGGGGGGTGACGGGATCCAGCCCGCAGCAGCGGGAGGGTCAGCACACGTGGGCCTGGAGGCCCGGTGCCCCCGCCCTCCTTCCAGAGAGCCTGACAGATTGAGAGTGGGGAGGAGAGGCCACCCCGCGGGCCTCGGCCCTGGCACAGCCGTGCCGGCTGCAGCCACTTCCTGCCCAGCCTGGACAAAAATGCCTTTGTCGGGCCGAGTTCCTCCCAGAGCCGCCTTCCCTGCCTCTTGCTCCCAG
Seq C2 exon
GAGTGTCCGCCGGACGGGAGGAGCTTCCGCGAGGAGCAGTGCATCTCCTTCAACTCCCGCGTGTACAACGGGCGCAGGCACCAGTGGAAGCCACTCTATCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492:ENSBTAT00000009855:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
NA
C2:
PF0009014=TSP_1=PD(1.8=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development