GgaINT0126461 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7647450-7648007:+
Coord C1 exon
chr17:7647450-7647525
Coord A exon
chr17:7647526-7647904
Coord C2 exon
chr17:7647905-7648007
Length
379 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
GTTAATGCATCCCATTGTAGGAG
3' ss Score
6.21
Exon sequences
Seq C1 exon
ACGAAAGTCGGTGAGTGGGCTGGCTAATAAAACTTGCACTGGAACATCCAAAAGATATCAGCTCTGCAAAGTACAA
Seq A exon
GTAAGGATATCCTTTTTCTCGCTGGTGACATTTGATGGTAAAACTGGGAAGTCATGCTTGCTTCACGTGATGGCATTCCTGAGTCCCTCGGATGGAGGTGCTGCTCATCCTGCAGCAGCCCCCCCCATACTGCCCCTCTAGCAGCTGGAGATCCCTTCTCTGGCTGCTATCCCTGCTGCTGGGAGCCATAAAACCCAGTGGGGTCCTTCTTGCCCCATCTGCCCTGGGGTTTCCCCTGCCCCTCCCTGCTGTGGGAGGAGGAGGATGTGGCTCTGGATGGGGCAGGTGATGGAAGAAGTGCTCCTTGCAGGGGGTGCTGTGTGCCAGGAGCCTCTCCCACATTTGATTTTCATCAGGATGTTAATGCATCCCATTGTAG
Seq C2 exon
GAGTGCCCCGCAAACGGAAGGAGCTTTCGAGAGGAGCAGTGTTCATCCTTTAACTCCCATGTGTATAATGGAAGAACGTATCAATGGAAACCTTTATACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
NA
C2:
PF0009014=TSP_1=PD(1.8=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]