HsaINT0004312 @ hg19
Intron Retention
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:14631]
Coordinates
chr9:136403471-136404995:+
Coord C1 exon
chr9:136403471-136403546
Coord A exon
chr9:136403547-136404892
Coord C2 exon
chr9:136404893-136404995
Length
1346 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTGTCCCTTCGCTTCCCAGGAG
3' ss Score
10.94
Exon sequences
Seq C1 exon
GAGGAAGTCCGTCCCGGGCCCCGGGAACAGGACCTGCACGGGCACGTCCAAGCGGTACCAGCTCTGCAGAGTGCAG
Seq A exon
GTGAGGCCCGGCCCGGGCAGGGGCACCATGGCCTGCTCTCCCTGTCATCATGCAGTTTTCAGGGGGTCTTCCAGGTGGCTCCTGGGCATTCTGGGCATTCTGTTGTGGGCTGCTCTTCAAGGAGAGCCCAGGAGCAGGGTTGAGAAGGCTGCGGGGGGCCCTGGGCTAGTACGGAGCCATCCACTGTCCAGACCACTGTCCCTGTGCTCACATGTGCTCAGCAATGCTGGGACGGGCGGACTCACTCTGCTCCTGGAACTTCAAGTGCAGCCTCAAGGTTTGGGGTCTCTGGTCGCAGCTCCACTTTACTCACAACATTCGTGCACCTGGTGCTCACAGAGACCCAGCAGTTGCCAGGCTTCCCCGTCCCATGAAACAGTACCCCCCACGCCATAAAACAGTTCCCTGGGTTGCTCTCGGAGCCCTTCTGCTCCAGCCCCCATCAGCTTCCTTGGGTAGCCGAGGCTGAAGAGGAGGTTCTGACTCTGACCAGGCAGCTCTCAGTGGGGCCCTGGGCAGTTGGAACCTGAACACCTTTCCAAGGACTGCAGGGCGTGAGGCTGGGGCACGCCGAGCTGGGATCTGGGCCTCCCAGGCTGGCTCGTGTGGCTTGCCTGGGCAGGGAAGGCAGAGCAGCTGGGGGTCTCTGTGTCTGTGTGTCTCAGGGGGTGTGTGCGCACGTGCAGGGAGTGAGGGGCTGGAGGGAGGCAGGTGGCCACCGCTTCTGTGTTGGCGTCACCTGGTCAGCTGCCCTCCTAGGGCAGTGCAGCCAGGGTTGGGGGAGGGGCATTTATGAGCTCCAGCATGAGAGGGACCCAGGTTTGAGCTCTGGCCCCGGCACGACTAAGCTGGGTCCCCTCCGAGGATGAGTCTCTTGTCTGCACGCTGGGTTCCTCTTTATGGAGTCAGGACCACGATCTTCCTGATTTACGCAGTGTGCATGGCCACGGACCGTGTGCCAGGCCCTGTCCCGTCACTGTAGACACACAGTCAGGGCCTGCTGAGGACACGGGCGAGGGGAGCACCCTTGCCAGCCATCCTAGGGTCATGTCCCCTCCACCGCAAGGCTGGGAGAAGGCGTGGTGGGGACTGGGAGGGTTGTGTCTAGAGTAGGCGGAGGGCTGGCGTGGGGGGCGGAGCTGCCCTTTCCTGCGTCCTTGCTCCCTCCTGAGAGCGCATGGGAGCGCGCAGGAGCCCTAGAGGCCACCCCGTGGGCCGTGGCCCCCGCACGGCTGTCCCGGCTGTCCCGGCTGTCCCGGCTGCAGCCACTTCCTGCTTAGCCTGGACAAAAATGCCTTTGTCGGGCCGAGTTCCTCCCGGAGCCTCCCTGTCCCTTCGCTTCCCAG
Seq C2 exon
GAGTGTCCGCCGGACGGGAGGAGCTTCCGCGAGGAGCAGTGCGTCTCCTTCAACTCCCACGTGTACAACGGGCGGACGCACCAGTGGAAGCCTCTGTACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-ADAMTSL2:NM_001145320:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
NA
C2:
PF0009014=TSP_1=PD(1.8=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)