BtaINT0014352 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104478384-104482482:+
Coord C1 exon
chr11:104478384-104478507
Coord A exon
chr11:104478508-104482401
Coord C2 exon
chr11:104482402-104482482
Length
3894 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ACCGCTGTCCTCTCCCCCAGGTT
3' ss Score
12.84
Exon sequences
Seq C1 exon
CCCATCGGCTGTGACGGGGTTCTCTTCTCCACGCACACGCTGGACAAGTGCGGCGTCTGCCAGGGCGACGGGAGCAGCTGCACCCACGTGACGGGCAACTACCGCAAAGGGAACACCCACCTGG
Seq A exon
GTAAGAGCCTCTGGCGCCCTGGGTCCAGGGCCTGCGGCAGCCTGCCTGTGGCCGCCGAGTGACCGTGCAGGGTTCTTCCCCTCCTGGCCCCCGCCCCCCCGATCCTCTGCCCAGGCCTGGCGGGGCTGGCCCAGCAGCTCTGGAAGGACCCCTTGGGGACAGGACTGAGAGCAGCTCTGTGTTCGCACCCCTGGATCCCAGGTGCCCTGGTACGCACGGGGCTGGGGAACCCCCTCCAACTCAGCACAGCCTACAAGGAGGTATTAGCCCCGCTCGTAACAGGGGGAAACTGAGGCACGCGTTCAGTCCTCGCCGCTGACCTGAGGGTGGGGCCTGGGCACATGGATTCTGGGGGCTGAGCTCTCAGACCCAAGTCTCCAGGGCTGAAAGGACGCACTGGGTCCCACCGGCCTGGCCGACCCAGCGCAGAGCCGGCCCCTCTCTTTCCCAGGCCGCGGCTTGTCAGCGGCCTCACCGGAGCACCCAGCTCTGGGGTCTACGGGCTGGGCCGACAGGGGGTCCGTGCATGTGCTGGGACTTGACGCTTTTGGAGGGATGTCGCTTATAATATTCGGGGTTAAACTGGAGGCATTCTTGGGTCTCGGTTAATGCTGTGGGATTAAACTGGGTTATCACAGCCTCTGGACTGGGAGAGGCAGGGCAGCTCAAAACCCATTTAGCAGATGGGGAAACTGAGGTGCAGGGTGGGAACTGCCTACTTGAAGTCCCCCACAGAGGCAAGGCACGTCTGGACTGGAACCAACCCCTGGAGAGCCCCCAAGGACCTGGCTGTTGGGACCGTGCCTCTCCTGGAGGCGGAGCAGATGTATAATTTCGGAGTTAGTGTTAGAGCTTGGATGTGGGACCCAGGGATGAACACGCCGACTGAGGAGGGTCAGGGTAAGAAAAGGAGAGGTGTCTTAGCGGAGGCCCAGCTGGACAGGGCTCTGAATAATGCCTGACAGGTACAGTGAGCACAGGCCACTTTCTCTGCAGGGCTCACTTTGGAAGGAGTGTGGGCAAAGACGTCGTGTGCTTCCTCCCTTCCTTGCACACACCTGCCTGCAGGACCTTCTGCCAGGTCCCGGGGTGTGGACACAGCAGAGGCAGCATTCGGGCAGTGGTCTCATCTGAGCACCACCTGTGTGCCGGGAGCTAGAGGGTACGGGGGCCCGTGCCTGCACGGAGCTCTCAGCCTGGGGGCCTGGGGGCTGACACGGAGCCAGTCCCACACATTTCTTCCAAGTGCCTTCTGTGCACAGAGCCATGCGCAGCAAGCCTGCCCCGCTCCCACCTCACAGCAGCTCCTCTGGGCAGGCCCACACTGCTGTCATGTTACAGGTGTGGAAGCAGAGAGGCTACGAAACCAGGTTAAGGCCACCCAGCCAAAAGAGCAGACTTGGGTCTGAACCCAGACAGCGTGATCCCGGGTCTGAGGTCCTAAGAACTGACGCACATGGTCCCCTGGTAGACGTGTGCATGGTAACCACGGGGAAGAATCTTGTGAGCTGGTCGCTAATTTAAAAATAAGTATATGTAAATGAAGATCATGGAGTCCGGTCCCATCACTTCATGGTAAATAGATGGAGAAACAGTGGAAACAGTGGCAGACTTTATTTTTTGGGGCTCCAAAATCACTGCAGATGGTGATTTCAGCTATGAAATTAAAAGACGCTTACTCCTTGGAAGAAAAGTTATGAGCAACCTAGACAGCATATTAAAAAGCAGAAGCATTACTTTGACAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTTCCAGTGGTCATGTATGGATGTGAAAGTTGGACTGTAGAGAAAGCTGAACACCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGATTCTTGAGAGTCCCTTGGACTGCAGGGAGATCCAACCAGTCCATCCTAAAGGAGATCAGTCCTGAATATTAATTGGAAGGACTGATGATGAAGCTGAAACTCCAAATTTTTTGGCCACTGGATGCAAAGAGCTGACTCATTGGAAAAGACCCTGATGCTGGGAAAGATTGAAGGCAGCAGAAAAGGGGATGACAGAAGATGAGATGGTTGGATGGCCTCACTGACTCGATGGACATGAGTTTGAGTAAAGTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCTGCAGTCCATGGGGTCACAAAGAGTCAGACACGACTGAGTGACTGAACTGACTGAACTGATATGTAGACCTTCAATGGCTAGCCACTCCAGTATTCTTGCCTGAAGAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTCCACGGGGTCACAGAGAGTCAGACACGACTAAGCAACGATGCACAAACCTTCATTTAAATAAGAGATATTTAAGCAAAGTCAACCAGTTAATCCTAAAGAAAATCAACCCTAAGTATTCACTGGAAGGACTGATGCTGAGCTAAATCTCTAATATGTTGGTCTCCTGATGCAAAAAGCCAAGTCACTGGAAGAAGACCCTGATGCTGGGAAAGATTGAGGGTCGGGGGGAAGGCGACAGCAGAGGATGAGATGGTTGGATGGTGTCCCTGACTCAGTGGATGTGAATTTAAGCAAACTCCAGGAGATGGTGAAGGACAGGGAAGCCTGGCATGCTGCAGTCCATGGGGTTGCAAAGAGTCAGACACGACTGAGCGACTGAACAAGCGCGGTCCTCACTTCCTAATCGTTTTACCTCGAGAGTTATTGCTGAGTCTGTGGCAGCCGGAAGTACTAGGGCAGCAGGTAGATGACTGTGTCCCTTTCCCCAGCCCTGCACCCAGCGACACCGGTTGGCAGTTTGAAATTGGCCACTGCGACAGGAAGTGTTTGCACCCCGGAATCAGGCCAGCACTGCAGGTCACAGCACCTGCGCCCCCACCAAGAGGGCCAGTAGTGAAGCGTTTAGGGGCACCCTGCTGGCTGGAAGGACAAGCTCAGGGTCTTCAGGTGCCCGTGAAGGGAAGCAGCCTGTAGAAGCGTCTCATCTGCCGGGGGGCCCACATGTTCCTCAGGTGACCTGAGGGTCGGCCCCAGCAAACCTGATTCCAGAACTTTCTCACCATCTTCTCCTGGAAGGCTTTTCATTCTTAAGGCTTTAAAAATCTCCCCTCCTTCTCCGCAGCGAACCCTCTACCACCTTCCAGCAGCACCCCCTTCCTCAGACCCTGCCCCCAAAACCCTTGGTCCCTTTGTAGGGGGCTCTGTGGGAATCTCCGTGGTTGCCTCCTCACCTGCTGGGGCCTTTGATGACAGGCCCCGAGCTGGGGCCGCGTGCTCCCTCACCTACATTTCTAATGTAGCAAGCCTGTAAAATCAGTGCGATGTTATGACAGTGTGGGTTTCTAAAATAATAATAATGAGAGCATCCTCAGGGTCAGACTCTGAGCTACCCAGAATCTCCTCCATCACCGAGCGTGGGGGCCGTCATCCCTGTGTGTGGATGAGAACATGGAGGCCCGAGGCTCCAGCAGCTTGCCCAGAGCCACGTTGGTGATAGCAGCAGAGCAGGACCCAGGACATTTGACTCTGGCCGATCTATGACCTGCGGGGCCTGTGGCATCCCTCGGGAGGAACAGGGCAGGTACTTGGGCGTGGCACCCATGGCCTCGATAGGAAAGTGTCTTGGAATCCAGTACCGCTCAGGCCGTGCTGGGGAGGCTGGTCAGCTCTCCAGACTCATAGGGGGTTCCCACAGCGCTGTGCACTCGCCCCTTGGGGGCCTGGGTGCAGCTCTTGGGTGGGGACGGGGCTGCCCTGAGACACTGCCTCTCGCCCACCAGGAGTGCAAGAGGGTGGTGACCGCCATCCAGAGCTGCCTTTCCTCTCGAGAGGCACCGGTCACGGCCGACCCACGGCTCACCGCTGTCCTCTCCCCCAG
Seq C2 exon
GTTACTCTCTGGTCACCCACATCCCGGCTGGCGCCCGAGACATCCAGATCGTGGAGCGGAAGAAGTCTGCGGACGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492:ENSBTAT00000009855:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(11.9=33.3)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development