HsaINT0004315 @ hg38
Intron Retention
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133540878-133544550:+
Coord C1 exon
chr9:133540878-133541001
Coord A exon
chr9:133541002-133544469
Coord C2 exon
chr9:133544470-133544550
Length
3468 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TGTCATCCTTTTGCCTCCAGGTT
3' ss Score
11.02
Exon sequences
Seq C1 exon
CCCATCGGCTGTGACGGGGTGCTTTTCTCCACCCACACACTGGACAAGTGTGGCATCTGCCAGGGGGACGGTAGCAGCTGCACCCACGTGACGGGCAACTATCGCAAGGGGAATGCCCACCTTG
Seq A exon
GTAAGCCACAGCGCGCCCTGGAGTCCAAGCACAGCAGAGTCTGGGAATCGGGGGTCCTGAGTGTGCTCCTGTCTGCAGCCTCCTGTGTACCACTGGGCAAGTTCTTCCCCTCTAGGGGCACCTGATTCAGCATCCCAGGCCGGGTGAGCTGGCCTGGTGATTGTAGGCCTCCGTTGGCTTGCAAGAATGGGCAACCCTTTGTTGAGGACCTGCTGGGTACCAGTGGACACTTGGCTTGGGGGTCACATTTGCCCTTTGAGACAGCCTGCAGGGAGGTGTTAACAATGCACCTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCTTGATCTGGGCTCACTGCAACCTCTGCCTCCCAGGTTCGAGCGATTCTCATTCCTCAGCCTCCCGAGGAGCTGGGACTACAGGCATGTGCCACCAAGCCTGGCTAATTTTTCTATTTTTAGTGGAGATGGGGTTTCACTATGTTGGCCAGGCTGGTTTCGAACTCCTGACCTCGAGCGATCCACCCGCCTCCGTCTCCCAAAGTGTTGGGGTTATAGGCATGAGCCACCATACCTGGCTAACACCACACTTTAAAAAGGGAGAAACTAAGGCCCAAGACCCATTCTCTCCACGGATATGAGGTTTGACCCTGGCACGCTGGATTCTGGGGCCTGAGTTTCAGAGGCTCCCTGTCGGCTCCAGGCTGACCCAGCCCAGAACCCCTCCTTCCCTTGGGCAGCACCTGTCCCCTTCCTAAGCTGCAGGCATTTGGCCCGATGTTTGTGTCCAGCTCTGTCCCAGCCCTCATCGGGGGTGGGCGTCTGTGCATGGGACAGCACTTTCTACTTTTGGAGGGATGTCACTTGTAATGCTTGGCATTAGATTGAACACACTTTTGGTTCTGAAGAAATGTTTGAGGAATGGAACTGGGTTATTGCAACCTCCAGACCTGGGAAGGCAGGACAGCTTCAGACCCACTTAGCAGATGGGGAAACCAAGGCCCAGAGTGGGAATAATCTGTCAAGGTCCCAATGAGGCCAGTTGACTCTGGACTAGAACCAGGCCTGTTAGGGCCACGGAGGACCCGACCGTGTCTTGAAGGTCGAGGGAATGACCTCAGCCTGCCACTGAGGGCTAACTGTGGCGTGAGTGTTGGCTCCAGGAGGTGCCAGTGGGAGGGCACTGGAGAGGGTGGGGCTTGGACATGGGACCTAGGGACGGGCGTGCCGGACTGACAAGGGACAGGCAGGGGTGTGAATAATGCGGGCTGGGTGTCCAGCAGGGCGAGGTGGGCAGAGGCCCTTTCTTTGGAGGCCTCGCTCTAGGAGCCGCTAAGGTGTCTGATTTTCCTCCCTTCCTCTCACAAACCTGCTCACACGGCCTCCTGCTGGACCCAGGGCATGCAGAGGGAGAGTGGGCATTGGGGCAGCACGTGTCTTGTAGGGCACGTAGTGTGTGCCAGGCACTGTGCACACAGTGAGGCCTGAGAGATAGGGCTCATGTCCTCGTGGAACTCAGCCTGGGGCCAAGGGGCTGACATGCAAACAGCGCCCCTCATTCTTCTCCATATTCACAAGGTAACTCATTCACGCCTGGCAACAGCTCTACAAGGCTGGCACTATTACTGTTGCTGAAATATACAGAAACAGTCAAAGAGAGGCTAAATAACTCATCCAAGGTCACACAGCCACAAGAGGCAGAACGGGGCCTGAACCCAGGCAGCCTACTCTTGGCCTGTGATCCTCCCAGCTGAGCCACACTCTTTCCCCGGACGAACTGTGCTTGGTAACCACGCTGGGGGCTGTGGGATGGGCTGGGGTATTAAATGCTCAAGAATCTTGTGAGCTGCTTGCTAATTTGAAAATTAAAGTATAACAGTCTATATTTAAATACATTATATTTAAAACAAAGTCACCATTTTCTAATCCTTTAGTGTCTATAACTATTTTTTTTTTTGAGACGGAGTTTTGTTCTTGTTGCCCAGGCTGGAGTGCAATGATGCGATCTCGGCTTTCTGCAACCTCCGCCTTCTGGGTTCCAGCGATTCTCCTGCCTCAGCCTCTCAAGTAGCGGGGATTACAGGCTCCCACCGCCATGCCCAGCTAAATTTTTTTTGCATTTTTAGTAGAGACAGTGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTAATCTGCCCGCCTCGGCCTCCCAAAGTGTATAACTATTTTATCTGTGTGGCAAAAACACCATATACGGGTGTGCTGCAGCCTCTCTTCCCAATGCCACACCCAGTGATATCAGGTTGGTAGTGCAAACAAACATAGCTTCAGTCGCTTGCTTCAAGCTTCTATCTTGAAACCCAAAGAAGGGGAAAAATGTTTTAAAATGCATTTTGAAGTTAAGCTGCCCCATTACAGTGGCTTGAAATTGGCCACAGCGGGGGTGTTTACACCACGGAAATTGGCCAATGCTACAAGTCACAGCTCCTGTTCCCCTGTGTCTCCAAAGAGCCCACTGTTAAACATTTTCCAGAGCACGGCTGTCTGTGAGGGACAGGTCAGGATCTCCAGGGACCTGTAGGTGTGATGGTGTTAGGGGAGGGATGGCAGGCGGGTACTGGCCTGCAGGAGACACTCACCCCAGCAGGGAGATGCACGCGGAATCCTCCGTTCCCAGAGGGATCCGGTGAGACAAGCGTCAAGCCTCAGGAAACGTCCGACCTGGAGAGCCCCTTCTTTCCTGTCCCAGGGCGTATTAAAATCTCTCCTTCTCCCCAGGCTCCTCTCTCAGCCACCTGCCAGCAATGCCTCTCCTTCTCTGAGCACCTCCCCTCCAGACCCTTGGTTTCTTTCTAGCTGGGAGGACTGCATGGCTGCCTCCGCACGGGCCTGGGGGCCTTGAAGACAGGCTCTGAGCTGGCTGATATTGCCCGATCTGGATCTCAGCCTGGGGCCTGGTGCTTAGGAAGGGCGTAGGCTTAGTTGGAGATTCTATCTGCAGCTCTCCTTGTCCTTTCTCACCCACGTCTTTGAGTGTAGCTAGCCTTGAAAGTCAACGTGTTGTTGTCACAAGACAGGATTTTAAAATGGCAGTGACAATGCACGCAGGGAGCTGGGGCTCCATCGGCTGCCCAGGGTCTCCTGGGTGACACATGGCAGAGCCGGACTGAACTCCCAGTGTGCTCCATGTCCCTGTGGCCCTCGCTGTCCCTCGGGAGGGGCTGGGGCAAGCACGGATGAGCCTTCCTATGGCCTTGGTAGGAAGGGGTGAGCCTGGGCAGGTGCCCAGCTTGGTGAGTCAGCCTCTGCAATGGGACGGGGCTGAGCTGAGCTACACAAGCGGGTGTGGGGGTTGGGCCAGCCCTTAGACAGCCACCGCTCACCCTCCAATAGCTGTGGAGTGGGCGAGTGCCACCCAAGGCTGCCTTTCCAATCAAGAGGGGCTCACTGTCATCCTTTTGCCTCCAG
Seq C2 exon
GTTACTCTCTGGTGACCCACATCCCGGCTGGTGCCCGAGACATCCAGATTGTAGAGAGGAAGAAGTCCGCTGACGTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859:ENST00000354484:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(11.9=33.3)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development